FastQCFastQC Report
Sat 31 Dec 2022
SRR5847984.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847984.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52065
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACATTGCGTCATCTCGTATGCCGTCT12932.4834341688274275No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACATTGCGTCATCTCGTATGC12072.3182560261211944No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACATTGCGTC1710.32843560933448573No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACATTGCGTCA1600.30730817247671177No Hit
CTTATACACATCTCCGAGCCCACGAGACATTGCGTCATCCTGTCTCTTATAC1200.23048112935753384No Hit
ATTCATGGGGACTTCATTCATTATAATGATTTCTGTTCAGCATCTCCAGTAT1060.20359166426582156No Hit
AGATAGTGGGATCTGCAGTGGAACTAAAGAGTATCAATCAAAGTGATGAAAA930.17862287525208873No Hit
GGAACTGGGATCCCCATGCATTTGAGAACCTTTGCATAGACTGTACTGCAGC860.1651781427062326No Hit
TCGCCTAGGGGCAGTATAGTGTCACCTCAACCTCAAATGATATGGCTCATTG860.1651781427062326No Hit
GTAATTGGGTGCATCCAATTGCTTGAACCATTTAAGTAGAGTTGACTGATTT850.16325746662825313No Hit
GCCTTGGGGAAACTACAGGGAGAAGGAAGAGATGTGTCTGGCATCATTTCCG850.16325746662825313No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACATTGCGTCATCTCGT830.15941611447229423No Hit
GCTACCGGGGAGAAGCAGTCAGAGGGATTCTTGCATTGTGATGAGTGCATAT830.15941611447229423No Hit
TCAATCGGGACTAAATATAAATATATGAAAAAGATGTCTCACTTTATTACTG820.1574954383943148No Hit
CTAGCTGCGGGGCCCTTCCTGGGCATCGTGGCTGAGGTGCTGGTGCTGGTCA810.15557476231633535No Hit
CAAACAGGGACCAGGATAATAAAAGTGGCAATAACAGGCCTTGTCTGATTCC790.15173341016037645No Hit
TATGCAGGGACAAGAAGTTCGTTCTGGTCTACAAGAACTCTTCCATGCAAGA780.149812734082397No Hit
GTCTATGGGATATATCACCCTGTCGACTATATTTATGGATTTATTACTGGGT760.1459713819264381No Hit
TTGCCGGGGACCGGAGGGCACTGAAGCCTTGCCACTTGCTCAAGTGGGGCTG750.14405070584845864No Hit
GTGAATGGGAAGGGGCAGAAGTTGCTATTTAGATTTAGTAAGTGATCCAACT750.14405070584845864No Hit
CCACCAGGGCCTACCAGAGAGTGGAGGGTGCAAAGAAGGAGGGGATCAGGAA740.14213002977047923No Hit
TGTATCGGGATTGTTGTAAAATGAGGAATGTATGTGAATATTCAGATAACCG730.14020935369249976No Hit
AAGCTAGGGATTGTGATAGTGTCCAGCAACTGATACAGCAAAACTCCCTCCT720.1382886776145203No Hit
AGCAACGGGGCCAGAGGCAGCTATTTCTATGGCTCCTTTTGCTGCTGAGGAC720.1382886776145203No Hit
ACTCGCGGGATATTTTTGTGGAGAGAAAGACACCAAAGAGTACATACTATAT710.13636800153654086No Hit
GCAGCAGGGATACCATGTTCTTCCTTTTGGCTTAGTTTTGCCATGCATCCTG700.13444732545856142No Hit
CGGCACGGGAGGAGTAAAACCCTATGAATGTAGTGAATGTGGGAAAACCTTC700.13444732545856142No Hit
TCCGCCGGGTATCAACAGCAGAATAAAGAAAGATTACATATGTAAAAGTACC680.1306059733026025No Hit
GATCACGGGCCTACTCAAATGGCCCGCTTGAAGAAAATATTATAATGTCTTC680.1306059733026025No Hit
ACTGCAGGGATGGCACAAGAGGGATCTTCAGGACCCCGGGCCAGTGTCACAC670.12868529722462305No Hit
CGACAGGGATGATAGATAGATAGATTAGATAGATAGATAGATACATACATAC670.12868529722462305No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACATTGCGTCAACTCGTATGC670.12868529722462305No Hit
GGCTCAGGGGCTGATACCAAAACCTGGCAGACACAACAACAAAAAAATACAA660.12676462114664364No Hit
AGGTGGGGGTTCAGGCTGGTCTTGAGCTCCTGGCGTCGGGTGGTCCTCTTGC650.12484394506866417No Hit
CTTTAAGGGGAAGGGCACTGAAAATGCCCTGGAAGCAGGAGAGAGGGACTGG640.12292326899068472No Hit
GGCAGCGGGCTTTGATGGGGACTTTAATCCAGTGGCTCCTAACCAGGGGTCA640.12292326899068472No Hit
GGGAAGGAACTCGTTTATTGATTTATTGAAGATCTTTGGCTGTTTTTGATAA640.12292326899068472No Hit
GTCTATGGGCACAGGTTATGTCATGTCGACACATGTAGTGTTTTCTATTTGA640.12292326899068472No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACATTGCGTCATCCTGTCTCT640.12292326899068472No Hit
TAACAAGGGGGAATCAACCCAAATGCCCATAAATGATAGACTGGATAAAGAA630.12100259291270526No Hit
AGCCCTGGGACTACATAGCATATACCCAAAATCACTGAAGAAAATCGCTGGC620.11908191683472583No Hit
CATCAAGGGGAGCTCCCCTTCCTCCAGGCTCATGATGGTGTTGCTAAGGAAT610.11716124075674637No Hit
AATCTAGGGAGCATTTTTGTAGAGCTCTGGAAACTCAACATTAATTTTTAGT610.11716124075674637No Hit
GCAAAAGGGATAATCCATCTCTATAAAATAGTTATGGATTTACACTGTAAAT600.11524056467876692No Hit
GAATTAGGGAAGTAGAGGTACTAGTGGAATATCCTTTACGTTGTCTGGTGTT600.11524056467876692No Hit
GCTGTCTCTTATACACATCTCCGAGCCCACGAGACATTGCGTCATCTCGTAT590.11331988860078747No Hit
GTTGCAGGGTCTATTATTGGGATGGATTGAAAGATAATATTGTTAAAATGTC590.11331988860078747No Hit
TCAAGCGGGATTGGGTAGTATGAGATATGAGACTGGAAATCTATCACTTCGT590.11331988860078747No Hit
ACTGCTGGGATTACAGGCGTGAGCCATCATGCCCAGCTGATCATCCCCATCT590.11331988860078747No Hit
ATTTCTGGGAGGAGTGGAAGTGGTTCTCATATACAGCTAGAACACCCCTTTA580.11139921252280803No Hit
GGTACTGGGCGATCTTAATCAGGGACGATAGATGTTATTTTATAAATTTCAA580.11139921252280803No Hit
GAATGAGGGGGATTGAACTCATACACAAAAAATCCAACTATAAAAGATAAGA580.11139921252280803No Hit
TCTCTTGGGAAATATTTTCAGAACTCAAAGGAAACAAACTCAAGTTTTAACA580.11139921252280803No Hit
TACGCAAGGGATTTGTAATGTATGCAACTCCTGCAACAGACCAGGCCCCACT580.11139921252280803No Hit
TATATAGGGTCTAAAATAATTACAGCACCATATTGCTCACTATAAAGTACAA570.10947853644482858No Hit
ATCTGAAGCTGTCTCTTATACACATCTCCGAGCCCACGAGACATTGCGTCAT570.10947853644482858No Hit
CGCACTGGGCACACGTTACAGAAGCTACGCATGGATCTGATCCGTTTACAGC570.10947853644482858No Hit
CTGTTCACGGGATAGTCAAACTCAAACTTCTGAAAACCAAATACAACATAAA570.10947853644482858No Hit
TGCATGCGGGCAGCCAGTAGTCAAAACAAGTCACTATGAGATCTGGGAAGCT560.10755786036684913No Hit
CTTTTGGGGGCGTCTACAGACAGCTCACCATTTTTGTCCTGTATCTGTAAAC560.10755786036684913No Hit
TTGCGCAGGGCTCGCTCCGGGGGGAATCATGGTCATTCCATGGAGACCTCCC550.10563718428886967No Hit
AGTGGGGGAGGATTGGGTTCAGGCATGAATAACAAAATCCCGAAACAATGGT550.10563718428886967No Hit
CTTATACACATCTCCGAGCCCACGAGACATTGCGTCACTGTCTCTTATACAC550.10563718428886967No Hit
ATTATGGGGGAATCCAGATTGCTCCTTCCTCTGCAGGAGCAGAATTTTTCCA540.10371650821089023No Hit
ATTTGTGGGCGGGATTGGCTAAACTCCCATAGTATTTATGGTGGCCGCCGGC540.10371650821089023No Hit
GTTTTAGGGATGGTTTTTCCTATCAGTACAGGTTAAGGATAATGGCGTGTTG540.10371650821089023No Hit
ATCCTGTCTCTTATACACATCTCCGAGCCCACGAGACATTGCGTCATCTCGT540.10371650821089023No Hit
CATGAAGGGACAAGCACTCTGAAATATTATTGAGTATTACATATTAAAGTAG540.10371650821089023No Hit
ATCTCAAGCAAGAATGGCGTTGGTTTCTTCCATTTCAAACTAATCAGCATTC540.10371650821089023No Hit
ATGCCAGGGTAAAAATTTAGGTCTTCTAATATCTCCAACAACCCATCTTCAA540.10371650821089023No Hit
GCTGAAGGGACAGATTGGTACCCGAGAACTGGAAGAGATGGGAGCAAAATTT530.10179583213291078No Hit
TAAAACGGGTAAGGGGTAAAATAAATTGGAGAAGAGAACATCCACATGGATT530.10179583213291078No Hit
AAGTGGGCAGTGTCAGCATTAGGGTTTTGGTTTTTGTTTCTTTTGGGTATTT530.10179583213291078No Hit
GCGTTGGGGCAAAGTAATGCTGCTTTTGGAATTTAGATTTCTTGCATCCAAA530.10179583213291078No Hit
TAAACTGGCGACGCTCTTCCGATTAAGCATGGGATGGAATAGACACATAGTT530.10179583213291078No Hit
GAAACCGGGTGCTACGTTAGCCTTGTAAGATACACCCCCACCAAATGTGCAG530.10179583213291078No Hit
CATACAGGGAGGACTGAAGGAGATGCCGAGCCACTGCTTGGTCCATCTACAC530.10179583213291078No Hit
GTCGAAGGGCAAATAGTGCTAGAAGTTCTAGCCAGTGAAATAAGGCAAGAAA530.10179583213291078No Hit
AGGTGAGGGTCATTATTACCCTCACTGTCAACCCAACACAGGCATGCTCATA530.10179583213291078No Hit
GCTCGTGGGGATATGATTTTTCTTCAGGGAACAGAGGTCATATTTAAAGTGG530.10179583213291078No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)