FastQCFastQC Report
Sat 31 Dec 2022
SRR5847967.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847967.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences184639
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACATTGCGTCATCTCGTATGCCGTCT15260.8264776130719945No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACATTGCGTCATCTCGTATGC12370.6699559681324097No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACATTGCGTC2090.11319385395284853No Hit
GGTCACGGGAGACCATGAAATGAATAACATGAAATGTCCATAATAGGCAAAT2070.11211065917818012No Hit
ATTGTGGGGAAACTGACTATTTTTACCATCAAAATTACATTGTTTTGTTAAT2060.11156906179084591No Hit
TCAAGAGGGATTACACTTTTCTGTTTCTTTTGTCCTCTTACAAAATGTTCAA2030.10994426962884331No Hit
TTAAAAGGGATACAGCTGACATATAGTCCTTTTATAATTATGATAGTGTCAC2030.10994426962884331No Hit
CATACAGGGATAGTGAGGAAGCGTCACAGAATAACACTATGTAGAAAGTAGC2010.1088610748541749No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)