FastQCFastQC Report
Sat 31 Dec 2022
SRR5847966.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847966.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences183643
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACATTGCGTCATCTCGTATGCCGTCT13930.7585369439619261No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACATTGCGTCATCTCGTATGC12000.6534417320562177No Hit
TCAAGAGGGATTACACTTTTCTGTTTCTTTTGTCCTCTTACAAAATGTTCAA2050.11162962922627052No Hit
GGTCACGGGAGACCATGAAATGAATAACATGAAATGTCCATAATAGGCAAAT1950.10618428145913539No Hit
ATTGTGGGGAAACTGACTATTTTTACCATCAAAATTACATTGTTTTGTTAAT1880.10237253802214077No Hit
CATACAGGGATAGTGAGGAAGCGTCACAGAATAACACTATGTAGAAAGTAGC1870.10182800324542726No Hit
TTCCTCGGGAAGTTCTGCGCTCAATGAGGTCTCTTGACTTCAGTACAAGAAC1860.10128346846871375No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)