FastQCFastQC Report
Sat 31 Dec 2022
SRR5847965.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847965.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences180936
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACATTGCGTCATCTCGTATGCCGTCT15020.8301277799885043No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACATTGCGTCATCTCGTATGC11420.6311623999646284No Hit
ATTGTGGGGAAACTGACTATTTTTACCATCAAAATTACATTGTTTTGTTAAT2020.11164168545784144No Hit
TCAAGAGGGATTACACTTTTCTGTTTCTTTTGTCCTCTTACAAAATGTTCAA2010.11108900384666401No Hit
CATACAGGGATAGTGAGGAAGCGTCACAGAATAACACTATGTAGAAAGTAGC1960.10832559579077684No Hit
GGCGTTGGGAATGTCTGGAAGAAAAGTAAAAGGTAGAATTTTAAAAGGCCAC1910.10556218773488969No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)