FastQCFastQC Report
Sat 31 Dec 2022
SRR5847900.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847900.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences110908
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGATTATGCATCTCGTATGCCGTCT5440.4904966278356836TruSeq Adapter, Index 3 (95% over 22bp)
TGTCTCTTATACACATCTCCGAGCCCACGAGACGATTATGCATCTCGTATGC5070.45713564395715367No Hit
CGTAATGGGTTAGCATGGGCGATCGTTTTTTTTTTTTTTTTTTTTTTTTTTT1660.14967360334691818No Hit
GAAACAGGGCGGGTGTTGGAATCCACACCAAACAATGGCTACCTCTATCACC1610.14516536228225194No Hit
CTGTCTGGGCATACAGTCTTATCACCTCACATCTTCCACTTGGGTATCTTGC1600.14426371406931873No Hit
GGCGACGGGAGGAAATGTCCAATCAGGGAAGTAAGTACGTCAATAAGGAAAT1590.14336206585638547No Hit
GCGTTTGGGAATGGGAGACTTTAACACTCCACTGTCAATATTAGACAGATCA1540.13885382479171926No Hit
CAATGGGCTGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAGAC1530.13795217657878603No Hit
ATTGAGGGGCATGAAGAACTCATATAATTCAATAATAGAAAAATAATCTGAT1490.13434558372705305No Hit
GGCTATGGGCTCACATAAACTTAAGGCAAAGGGTTGGAAAAAGACACTTCGT1470.13254228730118656No Hit
GGAGGTGGCAACAAAAGTAACAGATCCCAAAACAAAGGCCAGAAGCGGAGTT1450.1307389908753201No Hit
CGCGTAGGGGGACTCGCTTTCCGTGCGGTGCGGCGAGTGAGGCCCCGGTCTT1420.12803404623652037No Hit
CATACAGGGAGAACTGCATCAGGATATGGTGGTACCAGGAGACGATAAAGTA1400.12623074981065388No Hit
TATGTGGGGGCACCGTCATCACACACACTTCTATTTATATTTCTTTCTTTGA1400.12623074981065388No Hit
ACGTAGGGGATTTCACATTTTAATAGAATTCTGAAATATAGATTTGACCCCA1400.12623074981065388No Hit
CCGAACGGGGCTACTTGGGAGGCTGAGATGGGAGGATTGCTTGAGCTGGGGA1390.12532910159772062No Hit
TCATTAGGGCGTGGAGCTACTGCCCATGATGCTTTCCTAGTGCCTGGTTACT1380.12442745338478739No Hit
AATGCTGGGATTACAGGTGTGAGCCACTGCACCTGGCCTGTAGTAGCTTAAA1370.12352580517185414No Hit
GCACCAGGGATGAAAATTATGGGCATTTGTCCCAATGATTTTGTTTCAGCTG1350.12172250874598767No Hit
ACGTCAGGGCGAATACATGTATGGATAAGGGATTTGTTCCAGGTCACATAGC1340.12082086053305442No Hit
TTTGCAGGGGACCTTCCTGTTTATAATTTTCTAATGGAATTCTCAAATTCAT1330.11991921232012118No Hit
GTTAATGGGCTCCCTCTTGGACTTGTTTTCCACCCTCTGCAATGACCTTGTC1320.11901756410718793No Hit
GTTGATGGGCACTTTACAAAGAAGCAATCACTCAATGAAACTGCTGGCTTTT1320.11901756410718793No Hit
AAGCCAGGGGAATGTAAAGCCAATTTGATGAAATGGTTCAGGTTGTAGCAGT1320.11901756410718793No Hit
ACCTTGGGAGTCAACATGATGGACGAGTTTGCCAGATATGCCAGGCTGGAAA1310.1181159158942547No Hit
AAGACAGGGGGAAAACAAAAATCAGAAGGCTGCATTCTAGAGGGCAGAGAAA1310.1181159158942547No Hit
AGTCAAGGGAGGGTTCAAGGCCAAGCTGAAGTTGTTGTCCTCTATTTTCCAC1300.11721426768132145No Hit
CTAACTGGGACTCTTGAGCAACATGAACGTTTGTGTCATCTTGTAATACACA1300.11721426768132145No Hit
TCTGCAGGGATCACAGGCAAGGAAGATGCTGCCAATAACTATGCCCGAGGGC1300.11721426768132145No Hit
GCTGCAGGGAATATATGTTTCTAGTACTGGTGGTCATGATGAAAGAAACAGG1290.11631261946838821No Hit
GCACATGGGCTGTGAAGTTCAGTACCACATTATTTTTCATTTCGACCACAGC1290.11631261946838821No Hit
TGGTATGGGATATGCTGAAATTACAAAATGCTGATTACAAAAATGAAAAAAG1290.11631261946838821No Hit
CAACCAGGGCTGCAGGCTAATGGCAGGAAATGGTCATATTTGGGGTTTTTCC1290.11631261946838821No Hit
ATAACTGGGGGGAGGCCGAAGCAGGCAGATTACCTGAGGTCAGGAGTTCAAG1280.11541097125545498No Hit
TCGCTGGGGGAGCCAGACAGTGACCCGGAAGTAGAAGTGGCCCTTGCAGGCA1280.11541097125545498No Hit
GTGTGAGGGCATGAAGCATGGAGACCTGAATAAGTTCCTCAGGGCCCATGGG1280.11541097125545498No Hit
ACAGCAGGGCATGTTCCTCCTGGCGCGGACTCACGTCAAGCGGATCGCGGCT1280.11541097125545498No Hit
TAATGCGGGTCATCAGGTTGATGTGAGAAATGAGGGAGATGTCTTGAATGGT1280.11541097125545498No Hit
CAAACTGGGCACGCTGGTGAGGGAATTCAGCAAAGACCTGTGAAGCTACAGA1270.11450932304252173No Hit
GCTCAGGGGGGGGGTAGGTTGTTCCTGAGGTGGGAGGCGGTACCCGTGGCTG1270.11450932304252173No Hit
AAACCAGGGTAATACAGAATTATCATTTGCGTTTCTTGGTACTTTTTATTCA1270.11450932304252173No Hit
CAAAGTGGGAATACTGTTCTGTGTAGCTTAATCTATTTCTTTATACATCTCT1270.11450932304252173No Hit
ACTCGCGGGAATCCGAATTATCAAGGTAGTCATTATTTGAAGCTGAAGTTTG1270.11450932304252173No Hit
CAGAAGGGGCGGCCCTGTGAGCCGTGCTGGCCCCACCCGAGGCCGCGGGGGC1260.11360767482958849No Hit
TAATAAGGGGATCTTCAGATGGGGCTGCCATCTCGTTCAGGCCCCACGTCGC1260.11360767482958849No Hit
GAAACAGGGTCTCGCATTGGGGTAAATGGCATTAACATTGTTACTTGAGGTC1260.11360767482958849No Hit
AACATTGGGGTTGCTACTGAAATGATGTACTTTGACGTAATAAAAAATCAAA1250.11270602661665524No Hit
TAGTAGGGGGATCACACCACTGTACTCCAGCCTGGGCAACAGAGCGAGACTC1250.11270602661665524No Hit
ACAGATGGGTGGAATAATGACCCTTTAATAGAAAAAGAAAATATTTCTAACA1250.11270602661665524No Hit
ACGCACGGTTCATGGAGGGGCTTTAGCCATCAGCTTTGTACATCATCATTTT1240.11180437840372201No Hit
AGTTTAGGGAAGTGAAAGGAGAAACCCCTTATAAAACCATTAGCTCTTGTGA1240.11180437840372201No Hit
CATCATGGGAATATAAATTATTTTTGAGCTCTCACAGAACTTTGCTGAGATA1240.11180437840372201No Hit
GTAAAAGGGCTCCACGCTACTGAGCAACTTGTTAGAAGAGATGAAGGCGACG1240.11180437840372201No Hit
ACAATAGGGGAGTGAGAGACTTCGGCGGACATGGCTCCCAGCGTGCCAGCGG1230.11090273019078876No Hit
GCTTTGGGGGAGACGCTGATGGGAGGATGGACGTACTGGTGTCTGAGTGCTC1230.11090273019078876No Hit
ATGGGTGGGATGTGAGATGCTCCGGCACCAGAGAACCGTGGATGTCTTTCAC1230.11090273019078876No Hit
ACTTGGGGGATTAAAACTGCAAGAAGACAGGGGTCTTACTGAAGATCTTTTA1230.11090273019078876No Hit
TCAAAGCGGGAAGGCTAATGTAATGACTGTAGATTATCTATGTCCACATTGT1230.11090273019078876No Hit
TCGAGTGGGAGTGTCTTTGTTTAATGTGTTGAAACTCATCTTTTTAAATCTT1220.11000108197785552No Hit
GTGTACGGGAGGGCCATGTTTACTACCCTGAAATGTTGTATTTTTTGTCTTT1220.11000108197785552No Hit
TTCAAGGGGGAATAATGAATATAAGAAAAAATGACGAAAAGTGCTAGGCCAG1220.11000108197785552No Hit
ACGACTGGGATCTTCTTCCAGCTAAAACCACACACTGAGCTTCAGCACCAGT1210.10909943376492227No Hit
GTGTAAGGGCTTCCGATCTTCACGAGGGGAGGCATTGAGGCAGCCAGCGCAG1200.10819778555198904No Hit
TACGCTGGGGCTGGTGTTCGGCCTGGGCGCGATCCAGGTGGTCGGAGGCTCG1200.10819778555198904No Hit
GCAGCGGGGTTTGCCACCCCCAAATCTTCTCAATTCCTATAAGCCACCCCAA1190.1072961373390558No Hit
TCTGCAGGTACCCTGAGAAAAGTGAGAAGAGAGATTGCAGCCCAGGTCCCTG1190.1072961373390558No Hit
TTTTTGGGGAACAAAAGGCGACCTGCTGAGAAGTCCTTGTGCTCTGTGCTTT1180.10639448912612255No Hit
ATCTATGGGGTAACTGTGTCTTTGGGATTTCATTTTGGTTCCATCAAATTAG1170.10549284091318932No Hit
GTAGGCGGGGTGTGGGCCGAGAACAGCGGCGGGCCCTCGCCCTCATCGACCC1170.10549284091318932No Hit
GTCAGTGGGATGGAGAAAAAGACTGGGAGAATGCATCAACAACTTCTTCAGT1170.10549284091318932No Hit
TTTGCAGGGCTTGGGGGCCTCGGCGCTGACCAGGGGGACTGGGCGACCCTCC1160.10459119270025607No Hit
CTAGACGGGTGTTATAGCCGGAGCAAACTGGCTAACATTCTTTTTACCAGGG1160.10459119270025607No Hit
GGGTTTGGGACTGAAAAGGTACCCACATTTTGAATAGTAGTTATCACTCTTA1160.10459119270025607No Hit
TACTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCAG1160.10459119270025607No Hit
TATACTGGGATGTTTTTGTTTGAGGATATCTGTACAAGTTAAATCCCTCACA1150.10368954448732283No Hit
CACACCGGGCCGATCTCGCTGAGGGACAAGATCAAGAGGAAAGCTTCCAAAA1150.10368954448732283No Hit
GGCTCCGGGTAATTTAAAGCACTATGAAGACCGTATATATTCAAAGCTAAAT1150.10368954448732283No Hit
TACAATGGGGATAGGCTCCCACCATTTATGCTTCTTCACTGATAGGGTTGCA1150.10368954448732283No Hit
GCACCCGGCTTGAATCATCCTTTTGTCCAGTATTATATCCATGCTGTATATG1140.10278789627438957No Hit
CGTCGCGGGTAACAAAGAGTAGAACTATTACCAGTTTTATGTGTTGCTGTTT1130.10188624806145635No Hit
TGAGGCGGGCAACCGCTACAGCTCCTATCAGAAAGGGCAGCGCCCGTGGAAT1130.10188624806145635No Hit
CTCCTTGGGATAAGTAGAAGTGAAATTCATGGGTCATATGTTGAAAATTTTG1130.10188624806145635No Hit
GCACCCAACCCCACATCTGGGTGGCCAACTTGGCAGGACTTGGCCAGCAGCT1130.10188624806145635No Hit
GTGAGCGGGAACAAGATAAATTACTAAGTGTAGCCAACATATATTCTTACTA1130.10188624806145635No Hit
CGACTTGGGATAGAGAATTTGCATACTTGCCAACATGCACAATTTTTGTGAT1130.10188624806145635No Hit
ACAGCCGGGTTATCAAAGAGATATATGTCATAAAAAAGCAAATGCTGGAATA1130.10188624806145635No Hit
CTCGAGGGAATCAACCTTGTATCTGACAATGCACATCTGTTGATTCTAAAGT1120.10098459984852311No Hit
TGCATGGGGGAGAAGGGAAACGTGAAGAAGGTGAAGATGGCGGTGGCCAGGG1120.10098459984852311No Hit
GGGTTGGGGGCTCTTTTTCCGGCTGGAACCATGGAGGGTGTAGAAGAGAAGA1120.10098459984852311No Hit
CAAATGGGGTGGACATGGCACCCCAGCAGTAGGACACCCAGGACCCTGGATG1120.10098459984852311No Hit
CATTTGGGAATCTGTTTTCTAAATAATACTATAGGGAAAAGGATTGACAAGT1120.10098459984852311No Hit
AAATGTGGGGGTCTGCCAGAAGGATAGGTTGGAATATTTAAAACAAAAAATT1120.10098459984852311No Hit
TTAGGCGGGTAGCCTAAGTATACTAAAAATAGAAGGTTATTTCCTTCACTCA1110.10008295163558985No Hit
CTGACGGGAATTTATATTTAGTAACTTCTGTGTTAATACTGGATAGCATGAA1110.10008295163558985No Hit
ATCGCGGGCTGTAAAGGAGTCTTGTTTATCCTCTAATGGCCAGGCTTTTGGG1110.10008295163558985No Hit
TGTATAGGGAATACAAAGAAAACATATTGATTATTGTAGTATTCTTATGTCA1110.10008295163558985No Hit
TTCACGAGGAAGCTCTAGCTCCGGGCCTGAGTTTCCCCGAGGCTGCGTCGGA1110.10008295163558985No Hit
CCGTCAGGGGCCATTTTACTTTTTGCTTCTATGAGTTTGACTGCTCTCGCCA1110.10008295163558985No Hit
GCTTGAGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCC1110.10008295163558985No Hit
GCTGATGGGAATGGGCACATTTATGTTTTTCATCTCTAGTTACTGTCATCTC1110.10008295163558985No Hit
CTAAGTGGGCAAAAGGCTTGGACAGACTGTTCTCCCTCTTGTTACCTGTAGG1110.10008295163558985No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)