FastQCFastQC Report
Sat 31 Dec 2022
SRR5847874.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847874.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences124160
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAAGTCTTCATCTCGTATGCCGTCT7700.6201675257731959No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAAGTCTTCATCTCGTATGC7190.5790914948453608No Hit
AAGCCTGGGTTCTGTCACCGTGTCTACCATTGATGAAGAGGAAGAGGAGATT1910.15383376288659795No Hit
CCTAAAGGGTTCTTTCCCTCTCTGCAAATCTCTCCCCTCCCGTAAATCAGCA1440.11597938144329897No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)