FastQCFastQC Report
Sat 31 Dec 2022
SRR5847873.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847873.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences125406
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAAGTCTTCATCTCGTATGCCGTCT7620.607626429357447No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAAGTCTTCATCTCGTATGC6790.5414413983381976No Hit
AAGCCTGGGTTCTGTCACCGTGTCTACCATTGATGAAGAGGAAGAGGAGATT1800.14353380221042056No Hit
CCTAAAGGGTTCTTTCCCTCTCTGCAAATCTCTCCCCTCCCGTAAATCAGCA1400.11163740171921599No Hit
TTGTTTGGGGACTTGATGCCAAAAACAATCCATAAGAGGAAAAACTGATCAA1340.1068529416455353No Hit
CTTATACACATCTCCGAGCCCACGAGACAAGTCTTCATCCTGTCTCTTATAC1320.10525812162097507No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACAAGTCTTC1260.10047366154729438No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)