FastQCFastQC Report
Sat 31 Dec 2022
SRR5847872.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847872.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123668
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAAGTCTTCATCTCGTATGCCGTCT7940.6420415952388654No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAAGTCTTCATCTCGTATGC7070.5716919494129443No Hit
AAGCCTGGGTTCTGTCACCGTGTCTACCATTGATGAAGAGGAAGAGGAGATT1660.13423035870233205No Hit
CTTACCTGGGATGTGCAAAGACACACATAGGCTCAAAATAACAGGATGGAGG1280.10350292719215966No Hit
GCTGTTGGGATGCCAGAACCCCCTCCATCGTCTACGTTATCTGCATCACTTC1260.10188569395478216No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)