FastQCFastQC Report
Sat 31 Dec 2022
SRR5847870.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847870.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences162913
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAAGTCTTCATCTCGTATGCCGTCT10320.6334669424785008No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAAGTCTTCATCTCGTATGC9270.5690153640286533No Hit
TTTCGAGGGGTTAAGTCACATTGATCCTTTTTGATCTACAAATGCTGACTCT1930.11846813943638629No Hit
CTCCAGGGGGTACAGTAGAAGAGGATCTGGGTAAAAGTAGAGAAGGATCAAG1720.10557782374641679No Hit
CTTATACACATCTCCGAGCCCACGAGACAAGTCTTCATCCTGTCTCTTATAC1660.10189487640642553No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)