FastQCFastQC Report
Sat 31 Dec 2022
SRR5847811.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847811.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences79858
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTATGC10421.3048160484860627No Hit
CTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTATGCCGTCT10171.2735104811039595No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACT1770.22164341706529092No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCCTGTCTCT1420.17781562273034637No Hit
CTTATACACATCTCCGAGCCCACGAGACACACAACTATCCTGTCTCTTATAC1370.17155450925392574No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTA1270.15903228230108443No Hit
GAGTCATCTGACACTGATGATGAAGAATTACGGCATCGAATCCGGCAAAAAC850.106438929099151No Hit
TTAGCAGGGAAATACTAGTTGGGAAAGTTGGAGTGGACAGTAATATCAGATG840.10518670640386686No Hit
ATTTCTGGGCTGCACGTTGTGCACATGTACCCTGAAACTTAAAGTATAATGA830.10393448370858273No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)