FastQCFastQC Report
Sat 31 Dec 2022
SRR5847809.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847809.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences79654
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTATGC9841.2353428578602454No Hit
CTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTATGCCGTCT9351.173826800913953No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACT1860.23350993044919274No Hit
CTTATACACATCTCCGAGCCCACGAGACACACAACTATCCTGTCTCTTATAC1450.18203731137168253No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCCTGTCTCT1310.1644612951013132No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTA970.12177668415898762No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTAACTCGTATGC950.119265824691792No Hit
GAGTCATCTGACACTGATGATGAAGAATTACGGCATCGAATCCGGCAAAAAC940.1180103949581942No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)