FastQCFastQC Report
Sat 31 Dec 2022
SRR5847808.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847808.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences131914
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTATGC22071.6730597207271405No Hit
CTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTATGCCGTCT20691.5684461088284793No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACT2590.19634003972284972No Hit
CTTATACACATCTCCGAGCCCACGAGACACACAACTATCCTGTCTCTTATAC2370.1796625073911791No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCCTGTCTCT2100.1591946268023106No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTA1580.11977500492745274No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTAACTCGTATGC1550.11750079597313401No Hit
TAATCTGGGCATGTTTTATTGTTTACATTTTTCTGGCTTCATAGTACAAGTG1390.10537168155010082No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)