FastQCFastQC Report
Sat 31 Dec 2022
SRR5847807.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847807.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences132499
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTATGC22031.6626540577664737No Hit
CTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTATGCCGTCT20241.5275586985562155No Hit
CTTATACACATCTCCGAGCCCACGAGACACACAACTATCCTGTCTCTTATAC2590.1954731733824406No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACT2500.1886806692880701No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTA1980.14943509007615152No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCCTGTCTCT1850.13962369527317187No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTAACTCGTATGC1630.12301979637582171No Hit
GCTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTAT1390.10490645212416698No Hit
TAATCTGGGCATGTTTTATTGTTTACATTTTTCTGGCTTCATAGTACAAGTG1360.10264228409271013No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)