FastQCFastQC Report
Sat 31 Dec 2022
SRR5847806.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847806.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences129037
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTATGC21121.6367398498105195No Hit
CTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTATGCCGTCT20311.5739671567069908No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACT2340.1813433356324155No Hit
CTTATACACATCTCCGAGCCCACGAGACACACAACTATCCTGTCTCTTATAC2160.16739384827607584No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCCTGTCTCT1930.14956950332075297No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTA1560.12089555708827701No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTAACTCGTATGC1480.11469578492990383No Hit
GCTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTAT1390.10772104125173401No Hit
TAATCTGGGCATGTTTTATTGTTTACATTTTTCTGGCTTCATAGTACAAGTG1320.10229624061315747No Hit
ATGACTGGGGATATTTAATGGTTAACTGTTGGTTTGAGACCTTTAATGTGTT1310.10152126909336082No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)