FastQCFastQC Report
Sat 31 Dec 2022
SRR5847805.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847805.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93473
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTATGCCGTCT21812.333294106319472No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTATGC19612.09793202315107No Hit
CTTATACACATCTCCGAGCCCACGAGACACACAACTATCCTGTCTCTTATAC2770.2963422592620329No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACT2300.2460603596760562No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCCTGTCTCT1900.2032672536454377No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTA1660.17759139002706664No Hit
CTTATACACATCTCCGAGCCCACGAGACACACAACTACTGTCTCTTATACAC1510.16154397526558473No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTAACTCGTATGC1200.1283793180918554No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTACTGTCTCTTA940.10056379917195339No Hit
ATGCACGGGATAGATGTGAATGGTATTCTTCGAGTGACAGCTGAAGACAAGG940.10056379917195339No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)