FastQCFastQC Report
Sat 31 Dec 2022
SRR5847802.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847802.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43573
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTATGCCGTCT14723.3782388176164133No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTATGC12042.7631790328873382No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACT2560.587519794368072No Hit
CTTATACACATCTCCGAGCCCACGAGACACACAACTATCCTGTCTCTTATAC1840.42227985220205166No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTA1350.30982489156128795No Hit
GAAATTGGGGAGGAACAGAATCAATGAAACAAAACCAATGTTAGGGAATTGG1310.3006448947742868No Hit
CACCATGGGCTGATAGATGATGCTGAAAACCCAACATGGAGTTTTTTAGTCT1270.2914648979872857No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCCTGTCTCT1230.2822849012002846No Hit
TCATTTGGGCCATCAGTTGGGGTCATACCACTAGTCTCTGTCCTATACCCCA1000.2294999196750281No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTAACTCGTATGC990.22720492047827784No Hit
CTTATACACATCTCCGAGCCCACGAGACACACAACTACTGTCTCTTATACAC860.19736993092052418No Hit
ATCCTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGT860.19736993092052418No Hit
CGTGCCGGGTAGGGTAGGGGATCTTCTTGCGGGAGATTTCAGATGTGAAATC830.19048493333027333No Hit
GTATGTGGGGGTCAACTTAAGATTTGATTCAAGGCATTGATTTCCTAATTAA810.18589493493677278No Hit
TTGAAGGGGTGAAGAAAATTGAGCTCTCTGAAGTGACGGATACATTATTCAA780.17900993734652193No Hit
TAGAGGGACATACCCATGGCCAACCTCCTACTCCTCATTGTACCCATTCTAA770.17671493814977166No Hit
CTCGCAGGGGAGGGCTGGCTGGGCTCCAGCTGGCCTCCGCATCAATATTTCA770.17671493814977166No Hit
GCATGCGGGTGAGTCTTACAGCCTGTGGGATGTTCTCCCCAAGCTTCTAACT760.17441993895302138No Hit
GAACGGGGGGTGCGCGCCCCGGATCCGGCGGCCACCCAGAGGAGAAGGCCAC760.17441993895302138No Hit
GCTATAGGGAGCAGCAGCAGCAGCTCGGGCGTGGGCAGCCCGGCCGTGACGC730.16753494136277053No Hit
ATCTGAAGCTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTAT730.16753494136277053No Hit
ATACGAGGGCATCAAAAAGTCTGAAAGAGCACAAATAAAAAAATCTAAGATT710.16294494296926998No Hit
TTTGCGTGGGGATCACCAAAGGTCAGATTGTCATCAATGGATTATGAAAGGC690.1583549445757694No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTACTGTCTCTTA680.15605994537901913No Hit
ATAACAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA670.15376494618226882No Hit
GTTACTGGGATATCCAGAATATATAAAGAACTCTTAGAACCCAATAATAAAA670.15376494618226882No Hit
AGTATGGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC670.15376494618226882No Hit
CTCGTAGGGGAAAGGGATGCAAAAGATGCTGTTGATTTGATGAAGGCGCTGA660.15146994698551855No Hit
TAGAAAGGGGATTAAGACATTTTTGGTACTTGCATTTGACTTACGATGTATC660.15146994698551855No Hit
GTACAGGGGAGTTTAAGAGCAGAACAGATCTTTTACTTTGGCCGCTTGAAAA650.14917494778876828No Hit
CTAACAGGGGAGTTGCTGCTGCAGCTGAGGTACAGCGGCGGTTTCTGAGGTT650.14917494778876828No Hit
TAACCAGAATATATAAGAAGCTCCAACAACTTTATAGGAAAAATATCAAATA640.146879948592018No Hit
CATGCTGGGGAAGTTGGAGTCCCATCCCCCAAGGCACATTTTTTTTTTTTTT640.146879948592018No Hit
TACTGGGGGAACGAATTAAGAAGAAATAGAAAATTTAAACAAGCCAATAACA640.146879948592018No Hit
TTCGTGGGGATTTGGAGCAGGGTGGTCACACTGACCTTGCAGAGTTCTGAGA640.146879948592018No Hit
TCGTCCGGGGACCCTCCCTAATTTCCACTCCCCCCACCCCACTTCGCCTGCC630.1445849493952677No Hit
CAATAGGGGAGTGAAGAATGTCAATGGTAGTTTAATGGGAATAGCATTGACT610.13999495100176715No Hit
TAGAATGGGCCTCCACCTCTGCTCTGACCTCTCCCCATCTCTCTGCCCCTCC610.13999495100176715No Hit
GGTCTAGGGGGAGCTAACTATCCTAAATATATATGCACCCAATACAGGAGCA610.13999495100176715No Hit
AATTGTGGGCTACTCACTCTCACTGCCCAAGAACTATCAAACTCCTGAGCCA610.13999495100176715No Hit
TCTAGAGGGCACAATCATGGCAAGCCAACGCCACTTATCCAGTGAACCACTA610.13999495100176715No Hit
AAGTTAAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG600.13769995180501685No Hit
AAAAACTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCTC600.13769995180501685No Hit
GGTTGAATCTGAGATTTTGACTGGCTGGTTTATGAAGATTTCCTGCTTTAGG600.13769995180501685No Hit
GTTAAGGGGGCTAACTGATAAGAGTGGAGGAGGAATGCCTTCTCCTAAGAGT590.1354049526082666No Hit
ATTAAGGGGACAGTGACTTCTTAGTAAGCCCCTACATTATATGCATACTTGT590.1354049526082666No Hit
ACTCCTGGGAAACAAATAAACCAAAAAACAAATAGAGGGAAGGGGATATAGC590.1354049526082666No Hit
GGGCATGGGATCTCCACTTCTTCGCGTTCGGTGATGCTGCATTACCGCTCAG580.1331099534115163No Hit
TAACTGGGCTTTAGGTAGTGAATTAGTTAAAATGAATCTAAATTGTGTGTTT580.1331099534115163No Hit
GATCAGGGGGCTTCGGAATAATCTCCCATATTGTAACTTACTACTCCGGAAA580.1331099534115163No Hit
ACTACAGGGGAGACCCTGTCTCTAATAAAAAGAAAATGCATAGTATTTATTT570.13081495421476602No Hit
TCCGACGGGGGCCCCCAGGGGAAAGGGCTGTGAGCTGCTCCGCCATTAAACT570.13081495421476602No Hit
AAACTGGGATAGCACCTCCTCCGAGTAGCCTATCAGGATCCCAGCAGTGGCT570.13081495421476602No Hit
TGCGCGGGGAAACCAGTAACTAATATTTCAGCTGTTGAAACAGAAGAAGTTG570.13081495421476602No Hit
ATTTGCGGGACTCATTTTATTCATGCCTTGGTATGTAATTTGTCAAAATATC560.12851995501801575No Hit
CAATCAGGGGAAAAGAAGGTGTGTTCTGTGTTTCCAGGGTGCAGATATGATA560.12851995501801575No Hit
AACCAGGGGGGATAGCAAAGAATAATTTAGAGATATTAAATGAGAAGATGAC560.12851995501801575No Hit
AAAATCGGGACCAGTGAGAGAAGCAACTAGTTCAGAGAAATTTTGTAAGCAG560.12851995501801575No Hit
ACATAGAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC560.12851995501801575No Hit
GTCAGAGGGGGTTGATAAAGTATGTGTATCTTTACCTTTACTGGGCAGTTTT550.12622495582126547No Hit
TCAAGTGGGATTCTTTTAGGCATTGATGCTAACACAGCAAATAAAACGGAAA550.12622495582126547No Hit
CTGTTCGGGGGAGGCTCTGTGACTGGGGCAACCTGCAAGGAGCTGGCCAGCC550.12622495582126547No Hit
ACAGTTGGGACATCAACCTGGAGCTGCTGGAGTGTGTCTACCTGGTGTCTGC550.12622495582126547No Hit
CGTTAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA550.12622495582126547No Hit
CACATGGGGGACGGATGGACTTATTAATCAACTTCTCGAGAAATACTAAAGC550.12622495582126547No Hit
GTACGTGGGAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAATT540.12392995662451518No Hit
AATTTTGGGAAGGAGGCGATCTGCAGCTCACTTAAGGCCTACAACCACCACA540.12392995662451518No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTACCTCGTATGC530.1216349574277649No Hit
AATCGCGGGCAATCTTTGTGATATTACTTCGCTATTAAATAAAGAAAATTGG530.1216349574277649No Hit
CATCCGGGGGTTAAGCCAGAACTTTATATTTTCAGAACAGTTTTGCTCTGTG530.1216349574277649No Hit
CAATATGGGCATCAGAAAAAAGTAAGAATTTAAAGAAAATTGAGTTTGTTTG530.1216349574277649No Hit
CGTTAAGGGAGTCAAATCCATTTTAGGTACTCTACTGACTTTTTCCTTCACT530.1216349574277649No Hit
AACTCTGGGGAGGTTGTATGGTTTTTTTTCTTACCTCAATATTCAAATCCCT530.1216349574277649No Hit
ATTGCTGGGGTATACTCTACTAACAACAGTAATCAACTACATTGACATCATT520.11933995823101462No Hit
TTCGGTAGGGACATGCCTAATGAATGGCCAGGCTATGGTGTACCCTGGAGGG520.11933995823101462No Hit
GTAATTGGGACCTAGCCCGGTGCGTCTGCATGCCCTGGCAGGGTTCCAGCAG520.11933995823101462No Hit
AGGTAGGGGATCTAAAACTGGCATGGAATAAACCAGTAACTAATATTTCAGC520.11933995823101462No Hit
GGTACAGGGCTACATTTTCGTTTATAAATATGTTTGTGGTATAAAAAAATGA520.11933995823101462No Hit
TAAAGTGGGCATTGAGGATTGGTATAGCCATGATTTCAGTCATAGCAAGCTT520.11933995823101462No Hit
GTGACAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC520.11933995823101462No Hit
CGTAATGGGGTATCCAAAAAAAATTATTGCCCAAAGCAGTACCATTGAGCTT510.11704495903426433No Hit
TAACATGGGTATAATTATTTATGGTACAATTCTTGTACTTTAGCAAATCTGG510.11704495903426433No Hit
ACTTTTGGGACCTGGTATTAAAACTATTTACTGTTAAAAAAATCTGTGACTT510.11704495903426433No Hit
GGGGCGGGAGAATGGCGTGGGCCCGGGAGGCGGAGCTTGCAGTGAGCCGAGA510.11704495903426433No Hit
CAATGCGGGCACCACAATCAATGTCTTAGACACAGAGGCAAAGGATGCTTTG510.11704495903426433No Hit
ATAGCGGGGAGGTATCAATGTAAGGACACAAGAAACATGAAAAGGAAACATA500.11474995983751406No Hit
ACAATCGGGAACATGCCCATATTTTACTTGGAAATATTAAAAGAAAGGGTTC500.11474995983751406No Hit
CCGTTAGGGAGGCTCATTTCACTTAGCATCATGTTCTCCAGGTCTATCTATG500.11474995983751406No Hit
AAGTCGGGGGAGGCATTGATGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC500.11474995983751406No Hit
GAACAAGGGGGAGAGAAAGGCAGTCAGAGGAGAAAATGAGGTCCAGCTCGTC490.11245496064076377No Hit
GCTGTCGGGAAGGAGAAGCTGTGCTACGTCGCCCTGGACTTCGAGCAAGAGA490.11245496064076377No Hit
ACTTATGGGTATCCTTTGAAAATAAGGATTTTAATTTCTACATGTTAATAAC490.11245496064076377No Hit
AGCATTGGATGGGTTTTGGGCTTTTCAAAGAATACTATGTATAATTTGTAAT490.11245496064076377No Hit
ATTTTAGGGATTGTGGAGCTGGCTGAGGACGCCAAGTGGCGGGTGCGGCTGG490.11245496064076377No Hit
TTAGTGGGGGGGCCAGGACCCCCTCCTGCTCCTGCAGGCCCTGCAGACCCTG490.11245496064076377No Hit
TGAACAGGGCCAAGCTCACTTGGGCCAAGAGGTTTGAACATGAGCTTTTACC490.11245496064076377No Hit
GGCTAAGGGTTGGATGCAGTGCTCGCTGTTGCTGAATAGGCGATCACAACGT490.11245496064076377No Hit
CTGCATGGGGAAGATGAGTTCCCCGGCCGCCTGGACATCTGCGGCGAGGGAA480.11015996144401351No Hit
AGTGCTGGGACTGGGTTTCCCTTGATAAATCACCTTCCATCTTTCATACAAA480.11015996144401351No Hit
ATAGCAGGGGTAATTTTGTCCATCAAATGAATATGTGTGAAAACATTCCCTC480.11015996144401351No Hit
GTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTATGCC480.11015996144401351No Hit
CTAAGGGTGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC480.11015996144401351No Hit
GAGATAGGGACTCTAGCGTAAAGGACCCAGCCAAGAAATTGTAAAATAGATT480.11015996144401351No Hit
TATTGAGGGGGACCACACACAAGTGTTATAGGAGGAGTCTGGCCCTTGAGTA480.11015996144401351No Hit
CGGTCAGGGATTCATTGTGAATCCTGTAGCTTTTCTAGTTAACAAAAAATCG480.11015996144401351No Hit
GTGAACGGGCCAGGTCAGTTGTTTATGCTTAGAGTCCCCTGACAGAGAGATG480.11015996144401351No Hit
AATTAGGGGTACTGCGTAAATAACAAAATTAAGACAGAAATAAATAAGTTCT480.11015996144401351No Hit
TCGCTGGGTGTAAAAAACCTAATACTTTCCAGTCTTCTCAGCTTCCTGATCA480.11015996144401351No Hit
AAGAATGGGGACTTGCCATGGTCGTCTTTGTCTGCCGGCCTGCTTCCTTGTA480.11015996144401351No Hit
CATCTAGGGATCTTGAGATGACTATATTTAGCATCAACAAAGGAATGCATTA480.11015996144401351No Hit
GCTACGGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC470.10786496224726322No Hit
AGTCATGGGGCAGCAAGAGCTGTAAGTATCAAGAATTTTATTTTACAATTCA470.10786496224726322No Hit
GCCTTTGGGACCCTTGGCACTGATGGGCACTGGAAAACATAGAGTAGACCTG470.10786496224726322No Hit
TCGCGAGGGAGGAGTGGATGCGATCTGTCTCTCCTGGCTCCACTCTTGCCGC470.10786496224726322No Hit
GCTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTAT470.10786496224726322No Hit
CGGCGTGGGATGTCCAGAGTCCGTGAGGATTGGGAATCAGTCTAAAGCTGTG470.10786496224726322No Hit
CTTAAAGGGACCTTTCCCTTCTCTCCCCAATACCCTTCCCAGCTTCTGGTAA460.10556996305051292No Hit
ACCTAGGGGATGTCACAGATCCGCAAAGGCCACGACACCATGTGTGTGGTGC460.10556996305051292No Hit
GCCGCAGGGGATCTCAAGATGGGATTGTTTTAGATACACTGTTTTTATAATA460.10556996305051292No Hit
ACAGAGGGGGATCTATTGCAGGGTCTTTTTCAAGTTATTTTTACAGAAAGAA460.10556996305051292No Hit
GGCGCTGGGATGTGACACCAGAGCTCACGGGAGATTCAGAAATCATTGTCAA460.10556996305051292No Hit
TAGTGCGGGACCCCAGAGATTTAAGAAGAAAACCTCTAAATTTCAAAATTAT460.10556996305051292No Hit
AACGCCGGGACGGCTCTGGCTCTAAGCATCACCCTCGGTGGGTTTGGAGCAG460.10556996305051292No Hit
GAACAAGGGTAAAATGAAAACTGACCAAATGAACTAATTCTACCCACCTATG460.10556996305051292No Hit
GTTCAGGGGCACCTAAGGTGTCTGCATCCTCCTGCCAACGCATGGGCTCCAC460.10556996305051292No Hit
ATTGAGGGGGAGAGTGTGGTCAGGCGGCTCGGACTGAGCAGGACTTTCCTTA460.10556996305051292No Hit
AGTTATGGGCTTGACAGAGCAAAGATTTTAATTTTATAAATTATGATTTCTT460.10556996305051292No Hit
GTAGCGGGGAATTCACCTGCTCTAAACAATTGTTACTGACACACTGCTTTTA450.10327496385376266No Hit
AGCACTGGGATTTATAGTTTATAGAGAATTTTCTTATTTGATCATTCACTTT450.10327496385376266No Hit
CAGCTGGGGATGTGCATAGTGGGTAATGCAATATTGATTATACATTGACTTT450.10327496385376266No Hit
CCACCAGGGTGAGGGTTCCACCCCCATGACCCAAACACCTCCCACTAGATCC450.10327496385376266No Hit
CGAACGGGGCGATCTGACAGAGGGAAGCAACTGGATTTACAGATTTATTGTG450.10327496385376266No Hit
TTAGTGGGGTACCAGAGGAAAATTTCTTTATCACCTAAGTTCTTTCTAAATG450.10327496385376266No Hit
GTAATGGGGAAGTAATCCACCTGGCCTGCTCTTTTCATGTCTTAACATGGCA450.10327496385376266No Hit
ATGCTTGGGGACGCCCTCAGAGACTCCTCCCCTGTCGCCCAGATCCCACCCG440.10097996465701237No Hit
CTGCCTGGGAGGTTGCACATTCACTGAATTCACTGAGATTATTCCTATAATT440.10097996465701237No Hit
ATGTTTGGGGAGTAGACGAAGTTCCTGATGGAGCTGTAAAGCCACCCACAAA440.10097996465701237No Hit
CATTAAGGGAAGAAAGCAAGTTTCACATGAATAATGCTGTGTTGGAAGGCTT440.10097996465701237No Hit
TTAGGTGGGCGCACCCACCCTGTTCTCTACCTCTTCTATGAAGACATGAAGG440.10097996465701237No Hit
AATGCTGGGTGTCCAGAAATATGACCCAGAAAAAGATGAGTGGCATAAAGTT440.10097996465701237No Hit
GCACCTGGGTCTTACAAAAATTTAATGGCACTATTTGTTCTGCCTTTCCATA440.10097996465701237No Hit
CACGAGGGGAGACTAGCGGGGGCAGCCTCAGAGCGGGTGAGCTTGGGGACGC440.10097996465701237No Hit
GCCTAGTGTTACTGATATTCGAAGACCTCGGCTCTACCTCCTTCAGTGGCTA440.10097996465701237No Hit
GTGTAAGGGGAGCAAGAGAGGCATCCTCACCCTGAAGTACCCCATCGAGCAC440.10097996465701237No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)