FastQCFastQC Report
Sat 31 Dec 2022
SRR5847798.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847798.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72877
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTATGCCGTCT17132.35053583435103No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTATGC13521.8551806468433112No Hit
CTTATACACATCTCCGAGCCCACGAGACACACAACTATCCTGTCTCTTATAC2640.3622542091469188No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACT2110.28952893231060556No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCCTGTCTCT1520.20857060526640775No Hit
CTTATACACATCTCCGAGCCCACGAGACACACAACTACTGTCTCTTATACAC1330.1824992796081068No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTA1190.16328882912304293No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTAACTCGTATGC1090.14956707877656875No Hit
GTCTTTGGGCTGGCGGGCCGATACTACGCGCTCAAGAGCATGACGGAGGCGG1060.1454505536726265No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTACTGTCTCTTA970.1331009783607997No Hit
GCAACTGGGATGTGATGGAACTGGGAATAGAACCAAAGTACTTGCTCTTTTC910.1248679281529152No Hit
CTTGCGGGGGTACTCTGGCATATTATAGGTAAACGGTTTAAAAGAACAATTT890.12212357808362034No Hit
GTATATGGGACCTAATTTATTGAGAGTTTTTTAGCATGAAGCGTTGTTGAAT870.11937922801432552No Hit
TTTCCGGGGACAACAAAACGAGTGGCACGATTTATTTCAAACTAGGCCAGCT830.11389052787573584No Hit
TAATCTGGGGTCTGTTATCCTTGGTATCATCCATATGCTGTTTGGAGTCAGC810.111146177806441No Hit
GAAACTGGGCTTAAATTCATAACCACAAACCTCATAGAGATCTGTTAATGCT810.111146177806441No Hit
CCTCACACCTTACTACACATAAGAAAATTCATACTGGAGAGAAACCCTACAA790.10840182773714614No Hit
AAACTTGGGCTGCAGGTCTGCGGGGCCAAGTGTCCCGGCGGCGCACCTCGTG750.10291312759855646No Hit
GTAGCTGGGACCGAGCGGGTGCAAGCACTCGGGGTCCCTGGAGGGCAAGCCC750.10291312759855646No Hit
AGCAAGGGGGAATAAAAGAGTGATCTACAGTCATGATTTGCATTTCCTTATT740.10154095256390905No Hit
TTATCTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC740.10154095256390905No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)