FastQCFastQC Report
Sat 31 Dec 2022
SRR5847797.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847797.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70771
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTATGCCGTCT17412.4600471944723123No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTATGC12821.8114764522191291No Hit
CTTATACACATCTCCGAGCCCACGAGACACACAACTATCCTGTCTCTTATAC2390.33770894858063333No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACT1880.26564553277472414No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCCTGTCTCT1630.23032032894829804No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTA1280.18086504359130154No Hit
CTTATACACATCTCCGAGCCCACGAGACACACAACTACTGTCTCTTATACAC1180.16673496206073107No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTAACTCGTATGC1060.14977886422404657No Hit
CTTGCGGGGGTACTCTGGCATATTATAGGTAAACGGTTTAAAAGAACAATTT1060.14977886422404657No Hit
TTTCCGGGGACAACAAAACGAGTGGCACGATTTATTTCAAACTAGGCCAGCT1010.14271382345876135No Hit
GAAACTGGGCTTAAATTCATAACCACAAACCTCATAGAGATCTGTTAATGCT980.13847479899959023No Hit
GTCTTTGGGCTGGCGGGCCGATACTACGCGCTCAAGAGCATGACGGAGGCGG920.12999675008124797No Hit
TAATCTGGGGTCTGTTATCCTTGGTATCATCCATATGCTGTTTGGAGTCAGC900.12717073377513388No Hit
AAAAACTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCTC840.11869268485679163No Hit
AGCAAGGGGGAATAAAAGAGTGATCTACAGTCATGATTTGCATTTCCTTATT760.10738861963233527No Hit
ATCTGAAGCTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTAT750.10597561147927823No Hit
ATCCTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGT740.1045626033262212No Hit
AAACTTGGGCTGCAGGTCTGCGGGGCCAAGTGTCCCGGCGGCGCACCTCGTG720.1017365870201071No Hit
TGCACTGGGATTTACGCATTCCTCCAGTCTTAATAATCACATGCGGACCCAC720.1017365870201071No Hit
GTAGCTGGGACCGAGCGGGTGCAAGCACTCGGGGTCCCTGGAGGGCAAGCCC710.10032357886705005No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)