FastQCFastQC Report
Sat 31 Dec 2022
SRR5847790.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847790.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences173461
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTATGCCGTCT14730.8491822369293386No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTATGC12090.6969866425305977No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCCTGTCTCT2150.12394716968079281No Hit
CTTATACACATCTCCGAGCCCACGAGACACACAACTATCCTGTCTCTTATAC2130.1227941727535296No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)