FastQCFastQC Report
Sat 31 Dec 2022
SRR5847787.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847787.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43432
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTATGCCGTCT14123.251059126911034No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTATGC13993.2211272794253087No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACT2420.5571928531958004No Hit
CTTATACACATCTCCGAGCCCACGAGACACACAACTATCCTGTCTCTTATAC2060.47430466015840855No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCCTGTCTCT1530.3522748204089151No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGT1510.3476699207957267No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTA1260.2901086756308712No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTAACTCGTATGC1040.2394547798857985No Hit
CTTATACACATCTCCGAGCCCACGAGACACACAACTACTGTCTCTTATACAC880.20261558298029103No Hit
ATCCTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGT790.18189353472094308No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTACTGTCTCTTA710.16347393626818935No Hit
ATCTGAAGCTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTAT690.1588690366550009No Hit
AAAAACTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCTC620.1427518880088414No Hit
GTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTATGCC600.13814698839565298No Hit
AACGTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA560.12893718916927613No Hit
ATGCAAGGGGAGGTAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGG540.12433228955608767No Hit
AACGAACGGGGTGGGCTGGGCCGGGCCCAGGAAGTGAGGCGGCGCTGGGCCA520.11972738994289925No Hit
TCAGCTGGGGGTTGCGTCCGGGGGAGGGGATGGAAGGGCCGCTGTCGCCAAG490.11282004052311659No Hit
CAACTGGGTGCGACCCTGAGAAGCAGCACATCTGGCACATCCCAGGCCTGTG480.11051759071652237No Hit
CTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTATG470.10821514090992818No Hit
TATGGCGGGGACTTCAAAGCAAACACAGATTCCCCCTCCCCCTTAATATTTA470.10821514090992818No Hit
ACATCGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA460.10591269110333396No Hit
TCGCAGGGGATGCTCCCCAGAGCTAGGGAATGGTCCACAAAAAAGAAAACCC460.10591269110333396No Hit
GCTTAGGGGACGGACCAGTGTGCAGAAGGCTCCGGGAACCGCAGATTATGGT450.10361024129673974No Hit
CTGAATGGGTTCAGATTTCCTCTTTGCCTTCCAGATCCAGTTTTACTACTCA450.10361024129673974No Hit
ATATTTGGGACATACCCATGGCCAACCTCCTACTCCTCATTGTACCCATTCT440.10130779149014552No Hit
GCTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTAT440.10130779149014552No Hit
ACGCGCGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCC440.10130779149014552No Hit
CTTATACACATCTCCGAGCCCACGAGACACACAACTACCTCGTATGCCGTCT440.10130779149014552No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)