FastQCFastQC Report
Sat 31 Dec 2022
SRR5847786.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847786.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43334
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTATGCCGTCT13763.175335764065168No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTATGC12902.9768772788110955No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACT2240.5169151243827018No Hit
CTTATACACATCTCCGAGCCCACGAGACACACAACTATCCTGTCTCTTATAC1960.4523007338348641No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCCTGTCTCT1490.3438408639867079No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGT1380.31845663912862876No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTA1280.2953800710758296No Hit
CTTATACACATCTCCGAGCCCACGAGACACACAACTACTGTCTCTTATACAC1060.2446116213596714No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTAACTCGTATGC970.22384271011215212No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTACTGTCTCTTA850.19615082844879309No Hit
ATCTGAAGCTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTAT850.19615082844879309No Hit
ATCCTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGT830.19153551483823325No Hit
CTGAATGGGTTCAGATTTCCTCTTTGCCTTCCAGATCCAGTTTTACTACTCA590.1361517515115152No Hit
AAAAACTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCTC560.12922878109567545No Hit
CAACTGGGTGCGACCCTGAGAAGCAGCACATCTGGCACATCCCAGGCCTGTG540.12461346748511562No Hit
AGCGCGGGACAAAACTACATGGAAACTGAACAAACTGCTCCTGAATGACTAC520.11999815387455579No Hit
TGTGCAGGGACCGAAAGTAAAAATGGAGCAACGTGAGTGACCGCCCAAGGTC510.11769049706927585No Hit
CTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCTGTCTCTTATA500.11538284026399594No Hit
GACAAGGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC500.11538284026399594No Hit
ACATCGGGGAGGAAGCTTTTTGGAGAAAAGAAAAAGAACAGCAGCTATTACA490.11307518345871602No Hit
AACGTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA480.1107675266534361No Hit
AAGTGGGGGGTCCAGAGGGGGATCGCTGAGGAGCAGATGGAGAATGAGCCCC470.10845986984815618No Hit
GTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTATGCC470.10845986984815618No Hit
CTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTATG470.10845986984815618No Hit
AGCTAAGGGACAGCCTCTCTAGCCCAGTGCTGTTTCCAGAGGCAGCAGTGCA470.10845986984815618No Hit
CGGTCTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCG460.10615221304287627No Hit
ATGCAAGGGGAGGTAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGG460.10615221304287627No Hit
GCATTTGGGAACTCTTTAGTATCTTCTCTCTTACCTATTTGAGCCCCTCTAG460.10615221304287627No Hit
TCAGCTGGGGGTTGCGTCCGGGGGAGGGGATGGAAGGGCCGCTGTCGCCAAG440.10153689943231642No Hit
AGCTGTGGGATCTCCTTAATGAAAGAAACAGAGGGCAAACGGGAAAAAATCA440.10153689943231642No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)