FastQCFastQC Report
Sat 31 Dec 2022
SRR5847781.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847781.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences129028
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTATGCCGTCT24801.9220634280931272No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCTCGTATGC20471.5864773537526737No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACT3300.25575844002852094No Hit
CTTATACACATCTCCGAGCCCACGAGACACACAACTATCCTGTCTCTTATAC3220.24955823542176891No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTATCCTGTCTCT2170.16818054995814863No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTA1900.14725485941036054No Hit
CTTATACACATCTCCGAGCCCACGAGACACACAACTACTGTCTCTTATACAC1820.14105465480360851No Hit
GTAGGTGGGAAAGATGGAGAGAAAATCTTTGTGAAACACATATTGGAAAAAG1380.1069535294664724No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACACAACTAACTCGTATGC1340.10385342716309638No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)