FastQCFastQC Report
Sat 31 Dec 2022
SRR5847764.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847764.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences208150
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAGTCCACCATCTCGTATGCCGTCT11030.5299063175594523No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACCATCTCGTATGC9140.43910641364400677No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTCCACCACTGTCTCTTATACAC6070.29161662262791255No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACCACTGTCTCTTA4090.1964929137641124No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)