FastQCFastQC Report
Sat 31 Dec 2022
SRR5847762.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847762.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences142979
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACCATCTCGTATGC8570.5993887214206282No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTCCACCATCTCGTATGCCGTCT7940.5553263066604187No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTCCACCACTGTCTCTTATACAC3750.2622762783345806No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACCACTGTCTCTTA3570.24968701697452075No Hit
AGCTACGATGGGGGTTTACAGGAAAGCTATCTGGTTTTATTTCCCTAATCCA1910.13358605109841307No Hit
GGTTCAGGGAAGTTCTTAGAGACAGACAAAGAAACTCAGACTCCCACACAAT1900.13288664768952083No Hit
GTTCTTGGGACTGACACACTCGGGACTCCAGCCTCAAAAAGTGTGCAGATTA1780.12449380678281426No Hit
GCCACCGGGTGGTTTTAAAAGAGGTAAATGTATCCATAGACCACAGTGCCTT1740.1216961931472454No Hit
GCACCGGGGGTAAATTTTGGTGATGTTGTGACCAGAAATATGACATAGGAAC1700.11889857951167654No Hit
CTTCGAGGGGAATAAATCAGAAACTGGTAAGATTTGTTGTATTTTCATAAAA1670.11680036928499989No Hit
TGTCACGGTAGTGTAATAAGAAGAAAAAGATAATTATTTGCATTTATGATGA1630.11400275564943103No Hit
ATTTGGGGGGCAGAGAGTATAATGAAGAATCTTAGGCGGGTGCACCCAGTTT1610.11260394883164662No Hit
CATCACGGGATATTAGAGAAATGCAAATCAAAACCACAATGAGATATCTTCT1590.11120514201386218No Hit
CGTTAGGGGAAATGAGAGAGAAAAAGACTTAAGCTACTTCAAGGGGAAATTA1580.11050573860496996No Hit
AAAAACGGGAACCTTCATAAGCCCTCAAATTGATCACATGTAGTAAATTGTT1560.10910693178718552No Hit
TTTCAGGGGGCGGCGGCACCGCGAAGGGAGGAGTGGCAACATGGCGTCTTCG1560.10910693178718552No Hit
TGTTAAGGGTGCCTTGGTTTCTCCTTTGATTGCTGGTAAATTCTGAGGCCAC1550.10840752837829332No Hit
AGGACCGGGCACCTGAAGCTGATGCATGTTTAATGTAAATAATGTCCAGCAA1540.1077081249694011No Hit
AACGCTGGGAAGGGAGAGAATCCAAGCCTAAAATTAAATAAATCTTTCAGCC1530.10700872156050889No Hit
CAGCTGGGGTTTGTGATTGAAGTGCGTGCAAAACACTCAATCTGGTAGGGAT1530.10700872156050889No Hit
TCATAAGGGGGCACAGTAAGGGAAGAAGGTGATGGATTTGTGGGAACAAGTA1510.10560991474272445No Hit
CTTCGCGGGTAAGTTCAAAAAATAAGAGCAAAATCTCCAAAAAGAAAAAAAG1500.10491051133383225No Hit
TTTCTAGGGAACAATAAAAACCCTGGAAATAACAACTTCTGGGAAGAATCAG1500.10491051133383225No Hit
TTACCGGGGCTTCTTACCAGTTTATTGTAATACATGTAATATGTTAGATATG1490.10421110792494002No Hit
ATCACGGGAGAAGTTTTCAAAAACAATATCTATTTTGCACAAGTGATTATGG1490.10421110792494002No Hit
TAAGGGGGAGAGATTCTTGCGCAGCCACATGGTGGAACAAGAGTTATAGACG1480.10351170451604781No Hit
ATGGCCGGTATTTTCACTTGATACATGTATTATAAAAATACTTTAACAAAGA1470.1028123011071556No Hit
CACAGTGGGGGTGTTCTTGAGGAAGAAGAGAAATCTAAAAGTCTGGAAAACA1440.10071409088047896No Hit
CAATTAGGGAAGGGCTCTTGGCTTCACCCAGCAAAGAATTCAAGGGCAAGCT1440.10071409088047896No Hit
GCAGGCGGGTGAGAAGGCAGCTGGCCTGACCAGACAGTCCACTCCAGGCTAC1440.10071409088047896No Hit
TGTAAAGGGTCCGTGTGTCAGAATGGTCGAGACTATGTTGTGACCAAGCAGC1430.10001468747158673No Hit
GACCATGGGATTGGAAGCCTGTCTTCTTACTATTAGTTTTGAGCTTAGTTTT1430.10001468747158673No Hit
TGCGCCGGGCAGAACCAAAATAAAACAATAAAGTGATACAAAAATATTGTGG1430.10001468747158673No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)