FastQCFastQC Report
Sat 31 Dec 2022
SRR5847748.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847748.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123067
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACCATCTCGTATGC6100.49566496298764084No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTCCACCATCTCGTATGCCGTCT4160.33802725344730916No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTCCACCACTGTCTCTTATACAC3430.2787099709914112No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACCACTGTCTCTTA2520.20476650929981227No Hit
AAGAAGGGAGGCAGTGGCCCCTATTGAGAAGTTTTCCGGTAGAGTTGGAAAT1310.10644608221537862No Hit
ATTGTGGGGAACAACAACAAAAACTCAAAACCTTTCCCTCCAGTGGCAGCAG1270.10319582016300065No Hit
ATCATAGGGTGACTTTCGTCCGCCATTCTCAGGATGTCCTGCGTGATAAGGT1260.10238325464990614No Hit
ATCTGCGGGAAAGGAGGCTTCCTCCCTGCCTGCTAATTACCTGCTCTTCCCG1260.10238325464990614No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)