FastQCFastQC Report
Sat 31 Dec 2022
SRR5847747.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847747.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences124470
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACCATCTCGTATGC6410.514983530167912No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTCCACCATCTCGTATGCCGTCT4150.3334136739776653No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTCCACCACTGTCTCTTATACAC3760.30208082268819797No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACCACTGTCTCTTA2450.1968345786133205No Hit
ATTGTGGGGAACAACAACAAAAACTCAAAACCTTTCCCTCCAGTGGCAGCAG1270.10203261830159878No Hit
CCACTAGGGCTGCAAGCCATATGTCCAATAAGGTTTTAATATCCAGAATATG1270.10203261830159878No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)