FastQCFastQC Report
Sat 31 Dec 2022
SRR5847727.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847727.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences102042
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAGTCCACCATCTCGTATGCCGTCT6990.6850120538601752No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACCATCTCGTATGC5730.56153348621156No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTCCACCACTGTCTCTTATACAC3920.384155543795692No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACCACTGTCTCTTA2430.23813723760804373No Hit
CATACTGGGTGAGCTGAATAATTTTAGTTTCTTAAATCAACCGCACTCAAAA1460.14307834029125263No Hit
AAAATCGGGGATCTCCAGCTTGGAAATGAGACTTCTCATGAGCTTATTCTAA1230.12053860175221967No Hit
GTGCTAAATGCTCCCTTTGCTTGAAAATTTCCCAGACCACAGTCAGAGTGAC1150.11269869269516473No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACC1100.10779874953450538No Hit
AATACGGGGGAAGCCTTGTCGGAGAGAGCTGTGGCAGTGGTTGTGGATCCCA1100.10779874953450538No Hit
GATATCGGGCATCAGTTGGGGTCATACCACTAGTCTCTGTCCTATACCCCAT1070.1048587836381098No Hit
GTGGCGGGATCCAAAAATTTTATGTGGAAAAGTAAAGAAACACAAATAGCTG1070.1048587836381098No Hit
TTTGATGGGGGTCGCGCGGCCGGGTGGCCTCGGTCGGTACCCTGGGCGCGGA1060.10387879500597794No Hit
ACTATAGGGCTTCCTGGAGTGGAGGGACCTCAAAGTTGTCTATAAGAGATAT1050.10289880637384607No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)