FastQCFastQC Report
Sat 31 Dec 2022
SRR5847726.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847726.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences103540
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAGTCCACCATCTCGTATGCCGTCT7140.6895885648058722No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACCATCTCGTATGC5800.5601699826154143No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTCCACCACTGTCTCTTATACAC4060.3921189878307901No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACCACTGTCTCTTA2390.2308286652501449No Hit
CATACTGGGTGAGCTGAATAATTTTAGTTTCTTAAATCAACCGCACTCAAAA1600.15452965037666602No Hit
TTCAATGGGAGCTTTGTTCAGCAATGGTGTGGTTGGAGAGTTGTGCTGGGAT1360.1313502028201661No Hit
AAAATCGGGGATCTCCAGCTTGGAAATGAGACTTCTCATGAGCTTATTCTAA1290.12458953061618698No Hit
ACTATAGGGCTTCCTGGAGTGGAGGGACCTCAAAGTTGTCTATAAGAGATAT1110.10720494494881205No Hit
GTGCTAAATGCTCCCTTTGCTTGAAAATTTCCCAGACCACAGTCAGAGTGAC1110.10720494494881205No Hit
TCTTGTGGGACCCCTCACAATCATGGCAAGCCAACGCCACTTATCCAGTGAA1050.10141008305968707No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)