FastQCFastQC Report
Sat 31 Dec 2022
SRR5847711.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847711.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99589
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAGTCCACCATCTCGTATGCCGTCT8420.8454749018465895No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACCATCTCGTATGC8050.8083222042595065No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTCCACCACTGTCTCTTATACAC4150.41671268915241644No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACCACTGTCTCTTA3500.35144443663456804No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACC1540.15463555211920996No Hit
AAGAACGGGCGATCTGGAGTAGGGTGGTGTAGATACTGGTGTGGTTTCTACT1250.12551587022663144No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACCA1150.11547460060850094No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)