FastQCFastQC Report
Sat 31 Dec 2022
SRR5847710.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847710.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences97930
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAGTCCACCATCTCGTATGCCGTCT7880.804656387215358No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACCATCTCGTATGC7370.7525783723067497No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTCCACCACTGTCTCTTATACAC4350.44419483304401103No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACCACTGTCTCTTA3240.33084856530174617No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACC1770.18074134585928725No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACCA1190.12151536812008577No Hit
AAGAACGGGCGATCTGGAGTAGGGTGGTGTAGATACTGGTGTGGTTTCTACT990.10109261717553356No Hit
CTAGCAGGGTTCTGGAAAAAGCGCCGCGCGCTGGGCGGGCCCGTGGCTATAT980.10007147962830593No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)