FastQCFastQC Report
Sat 31 Dec 2022
SRR5847708.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847708.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences158552
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAGTCCACCATCTCGTATGCCGTCT11990.7562187799586255No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACCATCTCGTATGC11300.7126999344063777No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTCCACCACTGTCTCTTATACAC5010.3159846611837126No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACCACTGTCTCTTA4210.26552802865936725No Hit
TTCTGAGGGGGAGGCCCTGCAGGAGGGCCGCACCGCCACCCTCCGGTACCCT2180.137494323628841No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACC2000.1261415813108633No Hit
TACGCAGGGCTGACATGGGGGGGATCCTGAAAAGAAGTGAACTTTTACTTTT1690.1065896362076795No Hit
TGACACGGGAGGTGCTGCTCTTCGTCTCAGCGGCCATCATGTTTGCTGCCAA1610.10154397295524496No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)