FastQCFastQC Report
Sat 31 Dec 2022
SRR5847707.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847707.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences152733
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAGTCCACCATCTCGTATGCCGTCT10720.701878441463207No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACCATCTCGTATGC10120.6625942003365349No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTCCACCACTGTCTCTTATACAC4960.3247497266471555No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACCACTGTCTCTTA4150.27171600112614824No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACC2060.1348758945349073No Hit
TTTTGTGGGGGAGGAGATTCAGATCAAAGAGCCAGCCGAGAAGCAAAAATTC1960.12832852101379533No Hit
TTCTGAGGGGGAGGCCCTGCAGGAGGGCCGCACCGCCACCCTCCGGTACCCT1820.1191621980842385No Hit
ACGTTGGGGTGCTCCATACATGTTACCTCCTATGATACCTCATTTTCATTTT1530.10017481487301369No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)