FastQCFastQC Report
Sat 31 Dec 2022
SRR5847688.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847688.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83453
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACTCGGGTGAATCTCGTATGC11911.4271506117215678No Hit
CTTATACACATCTCCGAGCCCACGAGACTCGGGTGAATCTCGTATGCCGTCT11691.4007884677602962No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACTCGGGTGA1470.17614705283213306No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACTCGGGTGAA1270.15218146741279523No Hit
CAACCTGGGATACAAATATTTGAAAGATATTTATTCAGGCTGAAGATTATGG1170.1401986747031263No Hit
TATGCTGGGAAGGAGCGCATTGATACTAGAAATGAGTTGGAAAGCTATGCCT1060.12701760272249052No Hit
ACGTAAGGGAGCCCAGTGACACCATCGAAAATGTGAAGGCCAAGATCCAGGA1030.12342276490958982No Hit
AGGCAGGGGTGTCCCAGCTAGTTCACTCCTTTCGCCGTGCGTGGTGGAGGCT1030.12342276490958982No Hit
TGGGCTGGGATGGAGATATTAATATTCTGTTCCAACTAACTATACCAATATG1010.12102620636765604No Hit
AACTGTGGGCCTGGTGGAACCCACTTTCATGTTCTTATCATTGTTTTGATCT1010.12102620636765604No Hit
GGATATGGGGAATTTCGAAAGAAATAATTGGCAAGATAATGAGAAAAGAAAA1000.11982792709668916No Hit
CACCTAGGGGAATGCAGAGCCAAAGCATAAAGATGGAAATAAAAGAATTGCA990.11862964782572226No Hit
TGTATTGGGGATCTTATATAGGGACTGACCTTTGATCTAGTTTGACCTTTGA980.11743136855475537No Hit
TTCATAGGGACAGACGGTCGGACTGACAGACGTGCAGACGGACAGAAGAGCA970.11623308928378848No Hit
TACACAGGGCATAGGTAATATGTGGAATCTGTTTCCAAGTATCAAGTCTTCT970.11623308928378848No Hit
AGCCTGGGCGACAGAGCAAGACTCCGTCTCAGCAACAACAACAAAATTGGTG960.11503481001282159No Hit
ATGGTGGGGCTTTAAACCATCACCTCGGCCAAGGAGTATGTTGAAAAAGAAA960.11503481001282159No Hit
AAAGGCGGGACCACATTCTTTGTAGCTTCAACACTTTAGGACTAAGGCATGC950.1138365307418547No Hit
TCTAATGGGGTGAGAGTGTAGGGCAGATGGAAGGAAGTGAGGTTAAAGGAGT940.11263825147088781No Hit
CGTGTCGGGTCTGCACAGCAAAAGAAACTATGATCAAAGTGAACAGGCAACC930.11143997219992093No Hit
AGTAACGGGATATTAGATGATATTATTCACTTGTCATTTTGTTTCTTTATCA930.11143997219992093No Hit
TGCACTGGGCAGCTCTTTTCTCCTTTTTCCCAAAGCATCCAGTGCTTTCTTT930.11143997219992093No Hit
CCCTGATGAACATCGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAAT920.11024169292895403No Hit
TGACAGGGGTTGAAACTTAACCAAAATAAGATACTGTCTCAGCTAGGGCTTG920.11024169292895403No Hit
ATATGTGGGTCTATTTGATGAATGAATTCATAAAATCTTAGGTTACAAAATG920.11024169292895403No Hit
GCGTAAGGGAGTTAAAGAAAGGAAAAGAAAACAAAAAACGAATGAAAATAAC910.10904341365798713No Hit
ATTTAAGGGGGTTAAGGTAAAAATGCTACTTAGCTCTTCTTCCCGTTAATTG900.10784513438702023No Hit
TCTGCGGGCACAACTAAAGTTAATATTTGTTTATGCCATTAAATATTTGTTT900.10784513438702023No Hit
GAATGTGGGGGCCGCGGTACCCTAACCGTGCAAAGGTAGCATAATCACTTGT900.10784513438702023No Hit
TACAAAGGGATTTCTTGTCATTGAAATGTATCTTTTATGTTTTTAAATGCAT900.10784513438702023No Hit
GCACTGGTATGATTGATGATGTGAAAACCTAAATTACTTGCAGCATAGTATT890.10664685511605336No Hit
TGTGGAGGGGTGCGTCTGGCGTCCGCGCGCTGCACAATGGCGGCTCTGAAGA890.10664685511605336No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTCGGGTGAAACTCGTATGC890.10664685511605336No Hit
TGTACAGGGGCAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGTG880.10544857584508646No Hit
AGTACAGGGAGGTTCAAATTCACACATAACAATATTAACTTTAAATGTAAAT880.10544857584508646No Hit
AATACGGGGAAAGTAGAATTCTTTAAGAAGTACAAATAAAATAAATCATAAA870.10425029657411956No Hit
AATTAAGGGATAGCCCCAAACTGGAAACAACTAAAATATCCATCAATGGCTG860.10305201730315267No Hit
GCATTTGGGGAACCTGATCCAAAAAACTACGAAGTCCTGAGCTTGTTTCCTG860.10305201730315267No Hit
TTTGGCGGGATCTGGCTACAGTGTGGATAACAGATTGGAGGGGGCAAGAATG860.10305201730315267No Hit
ATTACTGGGGAGCTGGAGATATGGCTAAATAACAGATGCAAGAATGACAATT860.10305201730315267No Hit
GATGAAGGGATTTGTTGTGCAATTTTTATTTATTATGTGATTATTCTCCAGG860.10305201730315267No Hit
TCGCGGGGAAGATTAGAGAGTGAATAATCAGGAGAGTTTGTTTTTTTCAAAC850.1018537380321858No Hit
GGTGCGGGATACTTTTTCCTCGAAATGGTGGTCAGCAGTATCAATAAATATG850.1018537380321858No Hit
CTAAGATAGGGATTGTCTTTTAATATTGAGCAAATAGTGAAAAGTATTAATG850.1018537380321858No Hit
GACAAGGGGTCCGCCAAGTGCGCCTGCGCGGAGGAGAAGTGGCGTCGAGTCC850.1018537380321858No Hit
ATTACTGGGGATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAA840.1006554587612189No Hit
ATTACTGGGCTTTACTGCCAGTGATTACAAAGTGGCTTCTGCTGAGTACCAC840.1006554587612189No Hit
CGTTTCGGGGGTGGTTTAAATAGTTGATTTTCCTATTTTAACAGTACCAACT840.1006554587612189No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)