FastQCFastQC Report
Sat 31 Dec 2022
SRR5847681.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847681.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences116736
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTCGGGTGAATCTCGTATGCCGTCT11410.9774191337719298No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTCGGGTGAATCTCGTATGC10280.8806195175438597No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACTCGGGTGA1840.1576206140350877No Hit
TAGTACGGGTCCTGTTCTAATTTTGCAGTGCAACACAGATATCTGTTTGAAG1520.13020833333333331No Hit
CGAAATGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1490.12763843201754388No Hit
TCGGCCTTGGCCTTGTCGGCGGCGGACAGGCCGGCGGCGATCTTCGCGGCAC1480.12678179824561403No Hit
GCCCATGGGAAACCTAAACCAGATCCATGTTTTTCTTTGCAATTTAGTGCTC1460.1250685307017544No Hit
TAGCATGGGGGACCAGAGTGAGTCAAGCATGTATGTGTATGTCACACGGCCA1450.12421189692982455No Hit
TCTGTTGGGGAGAGAAACAAATACCATACAAAGATGCTCCAGTACATCTGGC1430.1224986293859649No Hit
TAAACCGGGGTCTCTACAAAAATAAAAGTTAAAAAATATAAAGTTTTAAAAA1420.1216419956140351No Hit
AGTCAAGGGACCACTTGAACATCTGGGCTGGGTGTGAAGCCTGATTTCTGAT1400.11992872807017545No Hit
ACTTTTGGGATATCTTTTACATCTATTTTTCCCAGTCTGTGGCTTGCCTTTT1400.11992872807017545No Hit
TTCACGGGGGACTATTCCTAGCCATGCACTACTCACCAGACGCCTCAACCGC1390.11907209429824561No Hit
TCTGATGGGCAACCACATTGCTATAGCAACAAGGAAGCAAGATGTTTCCAAC1380.11821546052631579No Hit
CTCAATGGGAGCCTGGGTGACAGAGTGAGACCCTATCTCAAAACATAAATTT1360.11650219298245613No Hit
CTGTCAGGGGATTCAGGCTAAAATCCCAGGCGCTAAGAGGCACGCTGAGTAA1360.11650219298245613No Hit
CACGACGGGTATAGGAAATCTGAATCAATGGGTTTGAATAAAAAAGAGCTTC1340.1147889254385965No Hit
GTTTAAGGGACCCTGACCAGAAACTTACACTATAAAAAAGTTTAGTATAATT1340.1147889254385965No Hit
AAGGCTGGATGTCATCATGGAATGTCTGTTATCCTTTTCAAGAGGTGATGAG1330.11393229166666667No Hit
CAAAAGGGGACTGCTCCGGGTGTCGGCTCCGGCGGGACGGGCGGTTCTGCGT1330.11393229166666667No Hit
GTAGTGGGGGTCTTCTTTAAGTTCTTTCATCAATGTTCTATTGTTTTCCATG1320.11307565789473685No Hit
CTCAGAAGGGGCCACAGGCTGGTGGCCATGTTCTCTGAATTGGGTGCAGAAG1310.11221902412280702No Hit
CTGTGTGGACTGGGAGTCATGAATGTCTTTCCAATAATTCAGGGAATTCTAG1310.11221902412280702No Hit
CTGATAGGGAAATTATAAATTGTCATAAAGGAATCAGAACAATTCAAACAAA1310.11221902412280702No Hit
CGTAATGGGGGAAGGAACTGGGCAGTCCCACCAGAGCAGAAAGAAAGGAGGC1300.1113623903508772No Hit
GCAAGCGGGGGTCAAATAGAAACAAACCACCACATAGTTAGTGTGAAGATTT1300.1113623903508772No Hit
AAATGGGTACGTGGTTTACGTAACTTTAAACTGTAACAGCCTTAATGGAAGA1290.11050575657894736No Hit
TATTGCGGGATTTCAGTGTCAAATCTCATAGTGTTTGATTGTCTCTCAGTAT1280.10964912280701754No Hit
CAATGTGGGGAATCAACCTTGATGCGATCTGGGTTTGAAAAACCTATAAAAA1280.10964912280701754No Hit
GCTAATGGGCAGAGAGATCCAAAGCCACACAGCCGAGATGGCATGCAAACTA1280.10964912280701754No Hit
ACGCATGGGGGTGCTTGTTCCTTGAAAATGTTTGGTCATTCTAGTGTTTTGC1270.10879248903508772No Hit
ACAGATGGGATGTTCAAGAGAAAGCTATGAAACTTCATAATGCTTCTAATTC1260.10793585526315791No Hit
GCGAGGGGAATGAAACATTTTGCATAATGAGTGGCTGGATTCAATGGTTTTT1260.10793585526315791No Hit
TCAGGCGGGACTAGATGACTTATTACAATGTTCAGATCCCACTCCTTCATTC1260.10793585526315791No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACTCGGGTGAA1250.10707922149122807No Hit
AGACAGGGGATCCCTTTGTATTATAATAGTGACATTTCTAGAAAAGATGCCA1250.10707922149122807No Hit
TAGTAGAGGGATCGGTTTTTCAAACGAATTCAACATCTGTATTCCTCACCCA1240.10622258771929825No Hit
AGTAGGGGGCTATAACATCTAATGTATTTTCCATGCTCTGTAGAAAAAATAT1230.10536595394736842No Hit
ATAGAAGGGCTTGGTGAATTGATAAGTAAAGGCAGAAAAGATTATATGTCAT1230.10536595394736842No Hit
GTTACCGGGGCATGTGGCTGAAGAATGACTGGTTTTAAGGGCCCCAGATGGC1230.10536595394736842No Hit
CGTACGGGCCAGGAGAGAAAAAAATAAATAAATGAAAAGTAGCCATTTCACC1230.10536595394736842No Hit
TACTGCGGGAACCCAAGTCTTGAGCAATGTTTTTCTCAAAAAGCTGCTATCC1220.1045093201754386No Hit
CAAAGCGGGAAGTGTTCTATAACATGAAGCATATTGCATAGAATAAAAAGAT1220.1045093201754386No Hit
TCAGGAGGAATTCCCATTATCAAGTTCATCTAGTGGTCCACACAGGAGAGAA1210.10365268640350878No Hit
AACGCAGGGCATAATCAACTGCTAAATTATGATTTGTTTTCTTCCAGTTACT1210.10365268640350878No Hit
ATGTCAGGGAGCGGTTCCGCCTGGGCACCGACATGTCACTCTTCGCCACCGA1210.10365268640350878No Hit
ATTTACGGGGAATTTCTAATTCTAATGTTCAGTGCAATGGAAGACATTTATT1210.10365268640350878No Hit
CAAAGGGGCCGACAGTCAGCCACCTCAGCCCTGTGCATTTCTACTACAGGAC1210.10365268640350878No Hit
AAGACTGGGGTTTCTTCAACACGTCTGGTAAACCCACCACCTAGATCTTCAG1210.10365268640350878No Hit
AGACCTGGGATTTGTTATTAGGAAAATAAATGGATCTCAGGATTCTCCCCAG1200.10279605263157894No Hit
GCGAAAGGGGACCCCGCACAAGAAAAGAAATAACAGAAATCAGAGCAGAACT1200.10279605263157894No Hit
TGAAAAGGGGAACATCAGCGAGACTTCATTGCCCGTGACCTAGGTCCTACCC1200.10279605263157894No Hit
TCGCCAGGGAGCTAGATACAGAGTTTGGGGTTCCAAGCACAACCCAGAAGTG1190.10193941885964912No Hit
AGACAGCGGGATAGCATATCAAACTGACTTTAGAAAAAAACAAACGAGAAAT1180.10108278508771931No Hit
AAGGAGGGGCAGGGGAAGACCAAAGTTTGCAACTCGAACTGCTTTCGTCCAT1180.10108278508771931No Hit
GTAAGGGGGTCTCACTTCCTGAAATCCCCTTACAGAAAGCATATAGAATAGC1180.10108278508771931No Hit
ACGACAGGGGAAGCAGCACATTAGTAACCTGACAAGATTTCTTTTTCCCTTT1180.10108278508771931No Hit
CGTCGAGGGCAGACGAGTTAAATTTTGGGTGCTTGATAGCCACATGTAGTGA1170.10022615131578948No Hit
CAGGCTGGGACCAGGCTTCGGAATAATCTCCCATATTGTAACTTACTACTCC1170.10022615131578948No Hit
GCAGAAGGGAGAGCATTCTAGAACGGACCTGTCCCGTGATTTAGCAGCATTG1170.10022615131578948No Hit
CTATCGGGGCACATTGGATTATCTTTTGACCACCTCTGAGAACCATATGGGG1170.10022615131578948No Hit
GTCTCTGGGATCAACCAACAAGTCATTATTACCCTCACTGTCAACCCAACAC1170.10022615131578948No Hit
GACACTGGGATCTCATTGTAGTTTTAATTTGCATTTCTCTGATGACTAGTGA1170.10022615131578948No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)