FastQCFastQC Report
Sat 31 Dec 2022
SRR5847633.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847633.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93027
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCTCGTATGC8310.8932890451159341No Hit
CTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCTCGTATGCCGTCT7920.8513657325292656No Hit
CAAAAGGGCACCCAAGAACAGGGTTTGTTAAGATGGCAGAGCCCGGTAATCG1430.15371881281778407No Hit
GATCCTGGGAGATTGAAATAATTTTAAAAATCAAGCAGAAATTCTGGATCTA1310.14081933202188612No Hit
ACCATAGGGAAATGAAGAAGAAAGAAATTAAGACTTTCACCTGTTATAAATC1220.13114472142496264No Hit
AAATTGGGGGGGGCACCCATTTCAGGCAGAAGGTTTTGGTACCCTCCACTGA1190.12791985122598815No Hit
AAACAAGGGAGGAACAGGAATGAGAGAGCAGAGAAGTGAGATAGTGAAAGAA1180.12684489449299666No Hit
CTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCCTGTCTCTTATAC1170.12576993776000517No Hit
GTTACTGGGAATGCCTGAGCAGCGCCTCGGAGCCCGGCCCGCCCTCCGGCTA1160.12469498102701367No Hit
AAGTGTGGTTATGTTCCCAGCAGTGGGGGTCAGACGCCCTTCCTCAGAACTT1150.12362002429402216No Hit
ACACATGGGGAAACTCCCCATTGTCACTGAGAACCACCAAATCTGACTTTTA1130.12147011082803917No Hit
ACAGATGGGCTTCAGCATTTGTGCTGTCTACCTCTCACTGGGTCCTGGTGGG1120.12039515409504767No Hit
AAATGCAGGGAGATCCTAAATACTCCACCAAAAAACTATTTGAACTGATAAA1120.12039515409504767No Hit
AGTGCGGGGATTTTAATGAACTTTGATTGGTTACTTTTCCAGACATACAGAT1120.12039515409504767No Hit
CGAGTAGGGAGTGGAAAACAAAGAATGTAGAAAATATAATGAGTATGAGGCC1110.11932019736205618No Hit
CACACTGGGGAGAGAGTAAAAAATTTAACACCCATAGTAGGCCTAAAAGCAG1110.11932019736205618No Hit
CGAAAGGGAGCACTACAAAGATCGCATAGATCAAATAGGAAAAAAAATGTCG1090.11717028389607317No Hit
GCTTTCGGGAACCTGCCAGTACCTTTGCTTCTTCATCTAAAAAATTAAGATA1080.1160953271630817No Hit
GTAATAGGGTCCACAAATGGAAGAGATCATTGCATTTTGCTTTGGTAATGAG1070.1150203704300902No Hit
GCCAAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1070.1150203704300902No Hit
CCTAGGGGACTACACTAAAACTCCATCTCAAAAAGAAAAAATAAACAAAATT1060.1139454136970987No Hit
AAAATAGGGAGTTGCCAGAATTCATTCAGTCAACTAACAAGCACTCCTCTGT1060.1139454136970987No Hit
CTAGCAGGGAACCCAAAACGTATTGAGCGGGCAGTGGAAGAAAAGGCCTGCA1050.11287045696410719No Hit
CACAGCGCTCCGCAGCTTCCCACCACCGCCCGCCTCAGTTCCTTTGCGTCTG1050.11287045696410719No Hit
AACTGTGGGAAGTAGACAGATTGTCAAGGCAGAAAGTCAACAAGGGAGCACT1030.1107205434981242No Hit
CAATATGGGGTGTGTTAAAAAGACTTCTAATAGCACGGTTCATCATTCATGT1030.1107205434981242No Hit
GAGGAGATAAAGATATCTTTAGAAAATGGTATCCATTAGTCATTCATTTCAA1030.1107205434981242No Hit
CTAGTAGGGCGATCTTGTTAAGGGCAACATGGGTCAGGGAAGAACATGACAA1030.1107205434981242No Hit
GCATGGGGGATCGTGCCGCTGCACTCCGGCCTGGGAAACAGAGCGAAACCTT1020.1096455867651327No Hit
TACTCCGGGGACTTAGAAGAGTAGCATGAGGAAGGAAAAGATAAAAGGTTTC1020.1096455867651327No Hit
GTTTACGGGAGGGGTGAACTAGAGGAGAAGAGGGTGACTGGGCGGGGAGCAG1020.1096455867651327No Hit
AGATTAGGGGCAGCGCCGGAGTCAAAGCCGGTTCCCGGCCCAGTCCCGTCCT1020.1096455867651327No Hit
AAGAATGGGGAGGCTGTATATTTTTGAAGTTGTTGATCTGCACTGAAATAGA1020.1096455867651327No Hit
AACTAAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1010.10857063003214121No Hit
GCGCAGGGTTTGTTGGCAGCTCAGGGCAGTATTGCTGCAGCCTTGGCTTTTC1010.10857063003214121No Hit
ATTGCAGGGCGATCTTGAAGGGGAATGTGTAAAATGCTGATTTTAAGTGCGA1010.10857063003214121No Hit
CATCTAGGGGCTGAGTGCTGAGGCCGGCCAGGCCCGACACCTACACTCTCAC990.1064207165661582No Hit
TTAGGAGGGGTATGTCATTTTAAAATTTGTTTATCAGAAAGAATCCTGGCCA990.1064207165661582No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAACGGAAAACTCGTATGC990.1064207165661582No Hit
AATACTAGGAGACAAGGTAGGTCATAGAATTTCTTTATGGCCAGTTCCAAGA990.1064207165661582No Hit
TTTAGTGGGAAACTAAAGAGAATTCAAAAAGGGCTGATGGTAGGCTTTGAAC980.10534575983316673No Hit
TATCTAGGGGAAAGAAATCATTAACATCTTTACCTTAAAATATTTCAGTCTG980.10534575983316673No Hit
AATACTGGGGGTAAGAGTAAGTATTGTTATATGAAACTGTGTGTGTTTGAGT980.10534575983316673No Hit
AACAGCGGGATTGCGAGCAAAGTGCCGTCGCTACAAATCTCCAAAATCAGAA970.10427080310017522No Hit
GGGGTAGGGGTGCCCGACGAAGAACCAAATTCAACAGACGTAGAGGAAACGC970.10427080310017522No Hit
ATACCAGGGAATGGAATAAAATTGGAAATCAATAACAAGAAGAAACTACAAA970.10427080310017522No Hit
CTGCTTGGGGAAAACCAATGTGTTATTGAAACAAATCAATGGCAGTGTTAAT960.10319584636718372No Hit
TTCGGCGGGATTACATAATGGGAAAGGCATCAATTCAACAAGAAGAACTAAC960.10319584636718372No Hit
AGACACGGGGGTGGTCAGAGCAGTATGAGTGGATATGACCAAGTTCTGCAGG950.10212088963419222No Hit
GGCAGTGGGCTGGTGGCCCTGGTGCAAGTCATGCCTTGGTGCAGCCCTCAGG950.10212088963419222No Hit
GTCATGGGGGTGAGAAATCTGGAAACCAGTTAAGAGGATCCTGCACCCCCGG940.10104593290120073No Hit
CGTCGAGGGCGATCTGGATTTGGGAATCTGGATCCAAAGAAAGGGATGAAAG940.10104593290120073No Hit
CGATAAGGGCAAGAGCTGATGAGTAAAGAATCTCCTGTCTCTGCTGGAAATG940.10104593290120073No Hit
CATCTAGGGAATGCACCTATCTTAACAAATACAACATTGAACGTCATAAGAC940.10104593290120073No Hit
GCCAGTGGGCAGTGTATGGTTTTTATAGAGCAGATATTAAAATTTTAGGGAG940.10104593290120073No Hit
CGTCGAGGGGAGTTGAAGTGGCGAGAGCGCTCAGATACGCGACGCGTAGCAG940.10104593290120073No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)