FastQCFastQC Report
Sat 31 Dec 2022
SRR5847632.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847632.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92121
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCTCGTATGCCGTCT8170.8868770421510839No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCTCGTATGC8010.8695085811052855No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAACGGAAAACTCGTATGC1430.15523062059682374No Hit
ACAGATGGGCTTCAGCATTTGTGCTGTCTACCTCTCACTGGGTCCTGGTGGG1300.1411187459971125No Hit
ACACATGGGGAAACTCCCCATTGTCACTGAGAACCACCAAATCTGACTTTTA1250.13569110192030048No Hit
TGCTGCGGATAGCAGTAGTTCCAAGAGATGTTAATAGATGTAAGAAAAAAAG1140.12375028495131403No Hit
GTTACTGGGAATGCCTGAGCAGCGCCTCGGAGCCCGGCCCGCCCTCCGGCTA1140.12375028495131403No Hit
CTTCGAGGGGCAATGCACTGGTGCTCTATGTCGGGACTCAGGCCATTGCGCA1120.12157922732058922No Hit
CTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCCTGTCTCTTATAC1110.12049369850522683No Hit
GGCAGTGGGCTGGTGGCCCTGGTGCAAGTCATGCCTTGGTGCAGCCCTCAGG1100.11940816968986441No Hit
AACTGTGGGAAGTAGACAGATTGTCAAGGCAGAAAGTCAACAAGGGAGCACT1100.11940816968986441No Hit
CTAGCAGGGAACCCAAAACGTATTGAGCGGGCAGTGGAAGAAAAGGCCTGCA1100.11940816968986441No Hit
CAGCGGGGGTGGAAGATTTTGGAGAATAAGATATTTAAAAATTGCAAAATGT1090.11832264087450202No Hit
CAAAAGGGCACCCAAGAACAGGGTTTGTTAAGATGGCAGAGCCCGGTAATCG1090.11832264087450202No Hit
CGAGTAGGGAGTGGAAAACAAAGAATGTAGAAAATATAATGAGTATGAGGCC1070.11615158324377721No Hit
GTTTACGGGAGGGGTGAACTAGAGGAGAAGAGGGTGACTGGGCGGGGAGCAG1060.1150660544284148No Hit
CTAGTAGGGCGATCTTGTTAAGGGCAACATGGGTCAGGGAAGAACATGACAA1060.1150660544284148No Hit
GAGGAGATAAAGATATCTTTAGAAAATGGTATCCATTAGTCATTCATTTCAA1050.1139805256130524No Hit
ATACCAGGGAATGGAATAAAATTGGAAATCAATAACAAGAAGAAACTACAAA1050.1139805256130524No Hit
AAATTGGGGGGGGCACCCATTTCAGGCAGAAGGTTTTGGTACCCTCCACTGA1050.1139805256130524No Hit
GTAATAGGGTCCACAAATGGAAGAGATCATTGCATTTTGCTTTGGTAATGAG1040.11289499679769No Hit
TATCTAGGGGAAAGAAATCATTAACATCTTTACCTTAAAATATTTCAGTCTG1040.11289499679769No Hit
CATCTAGGGGCTGAGTGCTGAGGCCGGCCAGGCCCGACACCTACACTCTCAC1030.11180946798232758No Hit
GCCAAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1010.1096384103516028No Hit
AATACTGGGGGTAAGAGTAAGTATTGTTATATGAAACTGTGTGTGTTTGAGT1000.10855288153624038No Hit
GTCATGGGGGTGAGAAATCTGGAAACCAGTTAAGAGGATCCTGCACCCCCGG990.10746735272087798No Hit
CGTCGAGGGCGATCTGGATTTGGGAATCTGGATCCAAAGAAAGGGATGAAAG990.10746735272087798No Hit
AGTGCGGGGATTTTAATGAACTTTGATTGGTTACTTTTCCAGACATACAGAT980.10638182390551557No Hit
GATCCTGGGAGATTGAAATAATTTTAAAAATCAAGCAGAAATTCTGGATCTA980.10638182390551557No Hit
GCGCAGGGTTTGTTGGCAGCTCAGGGCAGTATTGCTGCAGCCTTGGCTTTTC970.10529629509015317No Hit
CAGACAGGCCTGGTGGGGGGTGGGGAAACCTCCTTCCACCTGAGCTTGCTTG970.10529629509015317No Hit
CTCATCGGGACAACCGAGCTAAAGCTCAAATTGCTCTTAAACTTGGTGTGAC970.10529629509015317No Hit
AACAGCGGGATTGCGAGCAAAGTGCCGTCGCTACAAATCTCCAAAATCAGAA960.10421076627479076No Hit
AGATTAGGGGCAGCGCCGGAGTCAAAGCCGGTTCCCGGCCCAGTCCCGTCCT950.10312523745942836No Hit
ATTGCAGGGCGATCTTGAAGGGGAATGTGTAAAATGCTGATTTTAAGTGCGA950.10312523745942836No Hit
TATTAAGGGTAATGGCTTCTGTAGCATTGGAGAAGTTACTTAATCACTCCAA940.10203970864406595No Hit
CAATATGGGGTGTGTTAAAAAGACTTCTAATAGCACGGTTCATCATTCATGT930.10095417982870356No Hit
GGATTTGGGGGACATCCCATTTTCTTTTGTCCAGACCCATGTTGGCAATCAT930.10095417982870356No Hit
TCCCCAGGGGGGTAGTCAGTTGACGAAGATCTGGTTTACAAGAACTAATTAA930.10095417982870356No Hit
TTAATAGGGATTCACACAAAAACCTGCCTCCTAACATTTATAGCATTTTTTT930.10095417982870356No Hit
AAACAAGGGAGGAACAGGAATGAGAGAGCAGAGAAGTGAGATAGTGAAAGAA930.10095417982870356No Hit
ACCGATGGGAGAAGGAACAACTTGGAGTTCATCTATAACAAGACTGGTTGGG930.10095417982870356No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)