FastQCFastQC Report
Sat 31 Dec 2022
SRR5847586.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847586.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences129714
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCTCGTATGCCGTCT8590.6622261282513838No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCTCGTATGC7280.5612347163760273No Hit
AAATGCGGGGAGGACACGGGTCGCTGGCGGGTTAGGTGGCTGCGTGGCCGCC1610.12411921612162141No Hit
CCCCGTCGTAAACGCTGAGGAATGATGTGGCAAGAATGCCATGATGTTCTTT1570.1210355088887861No Hit
GTGTTAGGGGGCTTCTGGGAGCTGCTGCTTCGCTGTGAGAAGTATCCGCGAC1530.11795180165595079No Hit
TTCTCGGGGAGATATACCACAGTTTGTTTACCCACTTTTCTGCTGAAATGGA1510.11640994803953311No Hit
CTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCCTGTCTCTTATAC1490.11486809442311546No Hit
AGCGGGGATGCCGGGGATTAGGAAGCCACTGCAGTAATCCAAGGCAGAGATA1300.10022048506714773No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)