FastQCFastQC Report
Sat 31 Dec 2022
SRR5847585.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847585.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences129219
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCTCGTATGCCGTCT8000.6191040017334912No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCTCGTATGC6880.5324294414908024No Hit
CCCCGTCGTAAACGCTGAGGAATGATGTGGCAAGAATGCCATGATGTTCTTT1870.14471556040520356No Hit
AAATGCGGGGAGGACACGGGTCGCTGGCGGGTTAGGTGGCTGCGTGGCCGCC1480.11453424032069587No Hit
TTCTCGGGGAGATATACCACAGTTTGTTTACCCACTTTTCTGCTGAAATGGA1400.10834320030336096No Hit
CTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCCTGTCTCTTATAC1320.10215216028602604No Hit
GTGTTAGGGGGCTTCTGGGAGCTGCTGCTTCGCTGTGAGAAGTATCCGCGAC1300.10060440028169232No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)