FastQCFastQC Report
Sat 31 Dec 2022
SRR5847579.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847579.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences98415
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCTCGTATGCCGTCT6610.6716455824823452No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCTCGTATGC6220.6320174770106183No Hit
CGATAAGGGAGGAAGCTTTTTGGAGAAAAGAAAAAGAACAGCAGCTATTACA1640.16664126403495402No Hit
TTGCTAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1280.1300614743687446No Hit
TCACATGGGATATCAGGTTGGAGGTACCTATGGGACCACAAGTATACGAGTT1230.12498094802621551No Hit
CTAGCTGGGTGATGCTAAAATGAACAAGACATGCTCTCTTTCCTTAGGAAAA1150.11685210587816898No Hit
CTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCCTGTCTCTTATAC1110.11278768480414571No Hit
TAAAAGGGAACTAAACTCCTGGTACTGACATTCATACGTGATGCTAAATTGG1110.11278768480414571No Hit
AGATATGGGCAGCTCCGTGAGGTTCTGGCCCAGACTCGCCTGGGAAATGGAT1110.11278768480414571No Hit
GCTCATGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1100.11177157953563988No Hit
CATTGTGGAATGAACAAGCCAAGGCAAATATTTACTGACTCAGCCAATAATA1090.11075547426713409No Hit
TCCTTAGGGTTAAAGTGGTTTTGAATTTTTGGACAAAACTGTCTTTATTTGG1080.10973936899862827No Hit
CTCGAGTCGGGAGCCAAAGTTTAGTAAATTTATTTTGTCAAAACAATTGGTA1080.10973936899862827No Hit
TCAGAAAGGGCCCAGAAAACTTGTGGGACACAGCTAAAGCACACCTGAGAAA1080.10973936899862827No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCCTGTCTCT1070.10872326373012245No Hit
CGACATGGGACAACCAAAGACACTCTAACTGATTCTGAGAGTACCAAGTTGG1050.1066910531931108No Hit
TTTAGGGGGTGCCGAGAATGAGGTGGGTCATCCGAGAGGGGATTGGAATCCA1050.1066910531931108No Hit
TAATCAGGGTCTCATTTCAAAATGACCTGTGTTGCAGTTATTGTTTATAAAA1040.10567494792460498No Hit
GTCGCCGGGAAGGTACCTATGAAAAGCGCTAGCTATCATGTGTAGTAGATGC1030.10465884265609918No Hit
GCTAGTGGGTACAAAAAATAAAAAATACAGGTGGCAGGCTGGATTTGGCCTT1030.10465884265609918No Hit
AGAAATGGGTTGTGGGGCTGCGCTTTGGGGACCAGCTCCTGCAGATTGACGG1030.10465884265609918No Hit
TTGACAGGGGCACCAAAAGAAATAGATCCAGATCTACTTGGTTGTCAAGTGG1020.10364273738759336No Hit
TATCCAGGGGTAAAAACAGGTTTAGGAATTCAGCAGTAAATTCATTCTTTAG1000.10161052685058172No Hit
AATAACGGGAAATAAAGCCATTTTATAATGAAACCACTTTAAAAATCCTCCA1000.10161052685058172No Hit
ATCACAGGCGCCACCTAGTGGCAAATGTTCATGCTGGCTTAAATATCGTTTG990.1005944215820759No Hit
TTTTACGGGCACCAGTTAAGCGTTTGAGACTTCGTGGTGATTGGTCAGATAC990.1005944215820759No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)