FastQCFastQC Report
Sat 31 Dec 2022
SRR5847577.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847577.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41458
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCTCGTATGCCGTCT7271.7535819383472429No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCTCGTATGC5291.275990158714844No Hit
CTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCCTGTCTCTTATAC1050.2532683679868783No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCTCGT960.23155965073086016No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAACGGAAAACTCGTATGC800.19296637560905014No Hit
GAAACAGGGGAAATATATATCTACATATGTATTTTCTTTCTATCCCAAGTTG540.13025230353610884No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCCTGTCTCT500.12060398475565633No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACGAACGGAAA490.1181919050605432No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGAACGGAA490.1181919050605432No Hit
CTTATACACATCTCCGAGCCCACGAGACGAACGGAAACTGTCTCTTATACAC460.11095566597520382No Hit
TCAAGAGGGTGGAGATTGTAACAAGAATATATCTGCATTACAATTGTAACAA450.1085435862800907No Hit
TCAAACGGGTATTATGATCTTGCTGCAGCCACAGTGCAGCTCCACATTAACT420.10130734719475132No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)