FastQCFastQC Report
Sat 31 Dec 2022
SRR5847576.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847576.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41083
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCTCGTATGCCGTCT6911.6819609084049363No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCTCGTATGC5561.353357836574739No Hit
CTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCCTGTCTCTTATAC1140.27748703843438893No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCTCGT1070.2604483606357861No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAACGGAAAACTCGTATGC660.16065039067254097No Hit
CTTATACACATCTCCGAGCCCACGAGACGAACGGAAACTGTCTCTTATACAC550.1338753255604508No Hit
CTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCTCGTATGCCTGTC550.1338753255604508No Hit
GAAACAGGGGAAATATATATCTACATATGTATTTTCTTTCTATCCCAAGTTG490.1192707445902198No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCCTGTCTCT440.10710026044836063No Hit
TCAAGAGGGTGGAGATTGTAACAAGAATATATCTGCATTACAATTGTAACAA440.10710026044836063No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)