FastQCFastQC Report
Sat 31 Dec 2022
SRR5847575.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847575.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40931
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCTCGTATGCCGTCT6661.6271285822481738No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCTCGTATGC4371.0676504360997776No Hit
CTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCCTGTCTCTTATAC1000.24431360093816423No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCTCGT960.23454105690063767No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAACGGAAAACTCGTATGC740.18079206469424153No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGAACGGAA710.1734626566660966No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCCTGTCTCT580.14170188854413526No Hit
GCTGAGGGGGCAGGCGGAGCTTGAGGAAACCGCAGATAAGTTTTTTTCTCTT500.12215680046908212No Hit
GAAACAGGGGAAATATATATCTACATATGTATTTTCTTTCTATCCCAAGTTG480.11727052845031884No Hit
CTTATACACATCTCCGAGCCCACGAGACGAACGGAAACTGTCTCTTATACAC480.11727052845031884No Hit
TCAAGAGGGTGGAGATTGTAACAAGAATATATCTGCATTACAATTGTAACAA440.10749798441279225No Hit
TCAAACGGGTATTATGATCTTGCTGCAGCCACAGTGCAGCTCCACATTAACT430.1050548484034106No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)