FastQCFastQC Report
Sat 31 Dec 2022
SRR5847563.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847563.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences173379
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCTCGTATGCCGTCT13090.7549933959706769No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAACGGAAATCTCGTATGC12340.7117355619769407No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAACGGAAAACTCGTATGC1810.10439557270488353No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)