FastQCFastQC Report
Sat 31 Dec 2022
SRR5847513.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847513.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences136976
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACCCGTAAATCTCGTATGCCGTCT7300.5329400770937974No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCCGTAAATCTCGTATGC6650.4854865085854456No Hit
CACGCTGGGGCGACCGGGGCGGAGGAGGAGGCGCCCTGGGCGGCGACGGAGC1560.11388856442004439No Hit
ACTCTTGGGTATCTCCCTCTTCGAGACCGCCACGGGCGAGCTGATGATTTAC1560.11388856442004439No Hit
CTCAGTGAGGGACTACCAGACCTAAGAAAAGAGATAGACAGCAATACAGTAA1530.11169839971965892No Hit
AAGCCAGGCACGTGTGTGAAGGTGCTGACCATCGAGCCCCCACCTGCAGACC1510.11023828991940195No Hit
AGCAGGGGTTTAAGAAAAATATACTGAATTTATAGAAAGCAAGTATTCTCCT1510.11023828991940195No Hit
AACACGTGGGCATATTGGCTGTTCGTATATATTTTCGTATATATTTTCCTTG1470.10731807031888797No Hit
CTTGTCGGGATGGAGACAGGTGGAAACCAAAGTTCGAGCTAAAATCCGTAAG1450.105857960518631No Hit
TATAAGGGGAGGGGCGGGGCACCGGCCTCTGGGCGGAGATCTGCTGCCGCGT1450.105857960518631No Hit
TGTAACGGGACAATGAGATACCATCTCACACCATTCAGAATGATTATTACTA1420.10366779581824555No Hit
GCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTATGAATTCTTTCTAATAAG1400.10220768601798855No Hit
CGTATTGGGAAGTTTATGACCTGAAACTAAAAATTCAAAATGAAAACATTGG1390.10147763111786007No Hit
GGCACCGGGGGCCCACAGTTCCGACGAAAAATGGCGGGGTCTCCTGAGTTGG1390.10147763111786007No Hit
CATTCCGGGTGCCACTAAAACGCTACTCAAAAGGAAATATATAGCCATAATG1370.1000175213176031No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)