FastQCFastQC Report
Sat 31 Dec 2022
SRR5847512.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847512.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences135602
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACCCGTAAATCTCGTATGCCGTCT7380.5442397604755093No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCCGTAAATCTCGTATGC6980.5147416704768366No Hit
ACTTGAGGGACATCATTTCTATAATTGTATAATGTATTTCTTTGTGGTTTTA1570.1157800032447899No Hit
GAAACAGGGATTTAGTCAATTCAACAATTTACAGGGCTGAAAATATTTATTG1490.10988038524505539No Hit
ACTCTTGGGTATCTCCCTCTTCGAGACCGCCACGGGCGAGCTGATGATTTAC1440.10619312399522132No Hit
TTAATGGGGCTGAGGCAGGAGCATCGCTTGGACCTGGGAGGTGGAAGTTGCA1430.1054556717452545No Hit
TGATCAGGGTGTCTTGAAATGTTTATTGAAGATGCTATATTTTTCTGTTCTG1430.1054556717452545No Hit
CGCAACGGGTCTGATTAAAACATTTGCCATTTACTTGTGGGATGTATCTGAT1390.10250586274538724No Hit
CTTGTCGGGATGGAGACAGGTGGAAACCAAAGTTCGAGCTAAAATCCGTAAG1360.10029350599548678No Hit
ATGTTGGGGGTGGCGATGGCCAACAGCGCTCTCAATCCCTTCGTCTACCTCT1360.10029350599548678No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)