FastQCFastQC Report
Sat 31 Dec 2022
SRR5847508.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847508.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62490
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACCCGTAAATCTCGTATGCCGTCT5120.8193310929748759No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCCGTAAATCTCGTATGC5030.804928788606177No Hit
TGCAAATGGGTAGTCAGTGGGCCGAAGAGGAAATCAAAAGAGAAATAAGAAA930.1488238118098896No Hit
TGCATTGGGGCCCTAAGTCTCTTTTAATCTACAGTGGTTCTCTTTCCATTTA880.1408225316050568No Hit
GTACTTGGGATTTTCGCTCTTGGATATCAACCTTGGTTCTTTTGGGATATTG860.1376220195231237No Hit
GAATGAGGGGCTGTCGTGCCCCCCTCTGTCAAGACTCCGACACCTGAACCAG830.13282125140022402No Hit
CGCTAAGGGGATTTCAGATTTTTCTTAAATGTAGTTATTTATATCCATAAAT830.13282125140022402No Hit
GTATGAGGGGGCTGCAGAGAGGAGAGAAGGAGTAGAGAATGAGGTGTTCAGC820.1312209953592575No Hit
TAGAGTGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA820.1312209953592575No Hit
TTGTAGCGGGGGGGCTTGATGCAAACACTCCAGCTGGAAATAAGCAGAAGGG810.12962073931829093No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACACCCGTAA790.12642022723635782No Hit
TCGTGCGGGGGTTTTGTCAGCATTTTACAGTTTTAGAAGATGAATTTGTTTT780.12481997119539126No Hit
TACATAGGGGCATTTTTCCGGTATATTGATTGGGAGAAACTTGAACGCAAAG780.12481997119539126No Hit
TACTAGGGGATGGACTAAATGCTCCAATTAAAAGACACAGACTGGCAAATTG770.12321971515442472No Hit
TTTAGAGGGGAGCCCGGACGGCGCCTCTCGAACGAGTGTGGGCGCGAGGCAG770.12321971515442472No Hit
ACCATGAGGCAGAAATCCCTGGGACCAAACCGTGTTAACATTCAAAAAGAGG770.12321971515442472No Hit
GCACGTGGGATGTACTAGCTCTTAAAAATGTCTGCGTTCTTCCCAGAAGTGA750.1200192030724916No Hit
GTAGGCGGGCAGCAGCCAAATGTTCTTCCATTTCTCAGAAGAGTCGTTATTC740.11841894703152504No Hit
CTTATACACATCTCCGAGCCCACGAGACACCCGTAAATCCTGTCTCTTATAC730.1168186909905585No Hit
CATGACGGGGGTTAGTGAAGGAAAATCGTGAAGCTCAACACATCAAAATTCA730.1168186909905585No Hit
GAAGCAGGGTATGCAAAGGATGGGATATTCCGCCGTTATCGTGGCCCAGGAA730.1168186909905585No Hit
TGCCAGGGGTATTCTTTATTGTGTCTTCTTGAGTCATCTTTTGCCACCAGTT720.11521843494959193No Hit
CAAAGAGGGATCCCAGCATGCCCAAGTGAGGAATTGGAAAAACTGAAATGGA720.11521843494959193No Hit
GATTTAAGAGCTTTGCTACTTCAAAAAATAAATAAATAAAAATGAAAACAAG710.11361817890862538No Hit
GATAATGGGATATAGATGCTTACCATTAACCTACCAACTCTTAATATCCTTA710.11361817890862538No Hit
CGCACGGGGAGTGAATGCCTTCTTCTGCATGGACTATGTGCAGAGACTGGAG710.11361817890862538No Hit
TACACGGGGGCCAAATATAAAACTAAAGTTTATTCTACAAACAACACAATAC710.11361817890862538No Hit
GCTCGCGGGAAATAATGAAATGAGATGAAATGAAATGAAATAATGAAAGGAA700.11201792286765883No Hit
TGCTTTGGGGAGACGTTCTTCGCCGAGAGTCGTCGGGGTTTCCTGCTTCAAC700.11201792286765883No Hit
GCCGAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA690.11041766682669225No Hit
GACTCCGGGCACCACATCTGAAGTATTTTGGAGCTTTAAACTTTAGTTATCT690.11041766682669225No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCCGTAAATCCTGTCTCT690.11041766682669225No Hit
GAGAATGGGGCCAACATCTGGTAGATATCTTAGGTTTCCTCAGATAATATTC680.10881741078572571No Hit
CGCTGGGGGAATTTTGGAAAATATAAAAATACATGGAAATTAGGCAATATGC680.10881741078572571No Hit
ACGACTGGCAAGTTTCTGGCCTGCCTCTCTTTCTCTTTCTTTCTCTGCATGT680.10881741078572571No Hit
GTTCACGGGCAGGAGGGGCCTCTGCAGAACACTAGCGGTTGCCGCAGGATCT670.10721715474475917No Hit
TGTCCGGGGCATGCATACAAAACAAAACGTGACTGAAAAGCAACAGAAACAA670.10721715474475917No Hit
GTACGAGGGCAGCTTCCACCATCAAGCAATCCACATACTTAAAAAGCCATCA660.10561689870379261No Hit
GAATGTGGGCGGCGCTTTAATTTTCAAATGTAAGTGTTTTTGTTTCTCTCTC660.10561689870379261No Hit
CATGTTGGGAACAGCATTAATTCATCATAACCTAATCACCTTAAAGGTCCCA660.10561689870379261No Hit
ACAAAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA660.10561689870379261No Hit
ACAACGGGGCAGCACACTTTGGTGGGAACGAACACAAGAAGATAGAGTAGTA660.10561689870379261No Hit
TTCGGTGGGAACCTAGCTTTCTTAGTTTGTAGATGTAGGAAACAAAATAGTG660.10561689870379261No Hit
TTGCGAGGGTACCTGAGGGGTTCATGCAACTGACTTTTCTCAATCAAAGGCA650.10401664266282604No Hit
GGTTTTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC650.10401664266282604No Hit
GTATGCGGGCTATGCAAGTGTATTCTGCCACAACAACCACTGTCTTTGTTAC650.10401664266282604No Hit
GGTAATGGGGCATATAAAAGTTGGGGGAGATAGCAAAACTCAGATCTTTCAG640.10241638662185949No Hit
CGTGAAGGGGAAAAAAAATGTTTGCAGTACTCAGCAAAAAATAGGGTACATA640.10241638662185949No Hit
TTCTCCGGGGAAGCTTCTTCATGGAGTAAAAAATGTATTTAAAAGAAAATTG640.10241638662185949No Hit
GTATTTGGGGAATTTCTCATGGGATAAGTTTCCCAAAGCTTGAATTATAGGC640.10241638662185949No Hit
ACCAGTGGGAAGATGAAGGAGGAATACAACACATACTCAAGCCTCAGCCTGT630.10081613058089295No Hit
AAGCCTGGCCCAGGAGAACCAGAGATGATCCCGAGGCAGCTGGGGAGAGGCC630.10081613058089295No Hit
TAGTGCGGGATGTTAAGCAAATTATTTTGAGACCTTTTGCTGGTAGACAAAA630.10081613058089295No Hit
CAGTCAGGGTGACCAGCAGTGTGCTTCACCAGCAGTATGGATATTGTCTTTT630.10081613058089295No Hit
CTATACGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC630.10081613058089295No Hit
GGCATAGGGTTTTACATAATTGTTATCGACTGACCCAGAGTCTGTAATTTTT630.10081613058089295No Hit
TCTACTGGGACCCACCTCAACAACAACTTCATGTTTGGGCAGAAGCTGAATG630.10081613058089295No Hit
GACAATGGGTGTGAAGGATATAAATATAAGTAAGATATTCTCTGGCTTCAGA630.10081613058089295No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)