FastQCFastQC Report
Sat 31 Dec 2022
SRR5847506.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847506.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62164
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACCCGTAAATCTCGTATGCCGTCT5170.8316710636381185No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCCGTAAATCTCGTATGC4740.7624991956759539No Hit
TTGCGAGGGTACCTGAGGGGTTCATGCAACTGACTTTTCTCAATCAAAGGCA870.13995238401647256No Hit
CTTATACACATCTCCGAGCCCACGAGACACCCGTAAATCCTGTCTCTTATAC830.13351779164789912No Hit
GTATGAGGGGGCTGCAGAGAGGAGAGAAGGAGTAGAGAATGAGGTGTTCAGC830.13351779164789912No Hit
GTACTTGGGATTTTCGCTCTTGGATATCAACCTTGGTTCTTTTGGGATATTG800.12869184737146902No Hit
GCAGGTGGGGTCAGGAGGAAGAAGACCTAGCTTTAGCACAAGCACTGTCAGC800.12869184737146902No Hit
TGCAAATGGGTAGTCAGTGGGCCGAAGAGGAAATCAAAAGAGAAATAAGAAA800.12869184737146902No Hit
CACAGGGAGTAATGATAAATGTGAACATTTTTGCTTATTCATTGAATATTTT800.12869184737146902No Hit
TGCATTGGGGCCCTAAGTCTCTTTTAATCTACAGTGGTTCTCTTTCCATTTA790.12708319927932565No Hit
CACACTGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA790.12708319927932565No Hit
TACTAGGGGATGGACTAAATGCTCCAATTAAAAGACACAGACTGGCAAATTG780.1254745511871823No Hit
GTACAAGGGGTGTGTTTTACAATTTTATGTTCCATAATGATGTATCTCGGAT770.12386590309503892No Hit
ACCATGAGGCAGAAATCCCTGGGACCAAACCGTGTTAACATTCAAAAAGAGG770.12386590309503892No Hit
AAGCCTGGCCCAGGAGAACCAGAGATGATCCCGAGGCAGCTGGGGAGAGGCC760.12225725500289557No Hit
TCAAGGGGGTGTGTGGCTGTCTGGGTGGATCAAAGAAAATAGGGACTGCCTT750.12064860691075222No Hit
GATTTTGGGTAAACTTGAATTTCAGAGTGACTTTATGCTAGACATGCATTGA750.12064860691075222No Hit
TACATAGGGGCATTTTTCCGGTATATTGATTGGGAGAAACTTGAACGCAAAG750.12064860691075222No Hit
TAGAGTGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA740.11903995881860883No Hit
TTAAGTGGGGTAATCTATGGGTGGTTGATGCATCTAGAACTTACACTGGATA740.11903995881860883No Hit
TACTTCGGGGACTGCATCCTTAGTTTCAGGGGTCTGAAAACAAATGCTACGA740.11903995881860883No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCCGTAAATCCTGTCTCT730.11743131072646548No Hit
CAAAGAGGGATCCCAGCATGCCCAAGTGAGGAATTGGAAAAACTGAAATGGA720.11582266263432213No Hit
TTCTCCGGGGAAGCTTCTTCATGGAGTAAAAAATGTATTTAAAAGAAAATTG720.11582266263432213No Hit
AAAAGAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC720.11582266263432213No Hit
TGGCTTGGGAAACCACATTTTGAGCAGTGAGTGAATCCAGCTGGTTGCACTA710.11421401454217875No Hit
GCACGTGGGATGTACTAGCTCTTAAAAATGTCTGCGTTCTTCCCAGAAGTGA700.1126053664500354No Hit
TTCGGTGGGAACCTAGCTTTCTTAGTTTGTAGATGTAGGAAACAAAATAGTG700.1126053664500354No Hit
CTTTCAGGGGAGAAGGAGTCAGTATTTTTAACGACATCTCTAATATTCATGC690.11099671835789202No Hit
TGTTAAGGGCACAATTTTAAGACTTTTAAAAAACAGAATGAAGATTATTATT690.11099671835789202No Hit
GGAACGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA690.11099671835789202No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACACCCGTAA690.11099671835789202No Hit
GAACTGGGACAACAAATTAAAAACAAAAACAACTCATGCCACAGTATGTCGT690.11099671835789202No Hit
CGCTGGGGGAATTTTGGAAAATATAAAAATACATGGAAATTAGGCAATATGC680.10938807026574866No Hit
GCGTCGGGGTGGCGGCACGTGCCTATAGTCCCAGTTACTTAGGAAACTGAGG680.10938807026574866No Hit
CGCTAAGGGGATTTCAGATTTTTCTTAAATGTAGTTATTTATATCCATAAAT680.10938807026574866No Hit
CGCACGGGGAGTGAATGCCTTCTTCTGCATGGACTATGTGCAGAGACTGGAG670.10777942217360531No Hit
GATCTGGGGGTAACAAATATGCCACACACATGCAAGATGCAAACAATAGGAG670.10777942217360531No Hit
CGTTATGGGGGAGATTGGGAAATGCAATTTATCTCTGTGCTCAGGAGAACAG660.10617077408146193No Hit
AAACCTGGGTATCCTTAGATAATACATTTGAATAACTATTTTTTGATTAACT660.10617077408146193No Hit
TGTTGCGGGGGCGCGCGCTGCGGGCAGTGAGTGTGGAGGCGCGGACGCGCGG660.10617077408146193No Hit
GGCTATGGGAACATTAAACAGAAGAAATCATTTTTTTGCTATGTAATACCTC650.10456212598931858No Hit
CAGTCAGGGTGACCAGCAGTGTGCTTCACCAGCAGTATGGATATTGTCTTTT650.10456212598931858No Hit
GATTTAAGAGCTTTGCTACTTCAAAAAATAAATAAATAAAAATGAAAACAAG640.10295347789717521No Hit
GTACGAGGGCAGCTTCCACCATCAAGCAATCCACATACTTAAAAAGCCATCA640.10295347789717521No Hit
GGTTTTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC640.10295347789717521No Hit
TAGCCTTGGGGATATGCTCTTGGCTAGCTTTTTATAAGTTAATGTGTTTCCC640.10295347789717521No Hit
CGTTCAGGGAGTCTCAAACACTCAGGAGGCTCCTGATTAAATTAGAAACCTG640.10295347789717521No Hit
CTGCGTGGGGAAATGATGAGATGAAATGAGGTGAAATGAAATTAGATGAAAT640.10295347789717521No Hit
GTATGCGGGACTGATAAGAAGAGTGAATTTTTGAAAGCATTGAAAAGAGACA640.10295347789717521No Hit
TTTAGAGGGGAGCCCGGACGGCGCCTCTCGAACGAGTGTGGGCGCGAGGCAG630.10134482980503184No Hit
ATCAGTGGGTGGATTTTGAACCACTTAATGAAGCGGCAACACCAGGTGTTTT630.10134482980503184No Hit
TCTACTGGGACCCACCTCAACAACAACTTCATGTTTGGGCAGAAGCTGAATG630.10134482980503184No Hit
GACAATGGGTGTGAAGGATATAAATATAAGTAAGATATTCTCTGGCTTCAGA630.10134482980503184No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)