FastQCFastQC Report
Sat 31 Dec 2022
SRR5847505.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847505.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences130778
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACCCGTAAATCTCGTATGCCGTCT7510.5742556087415315No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCCGTAAATCTCGTATGC6320.48326171068528345No Hit
CCTAACAGGGGGGTCCCAATGGGAGGTAATTGAATCATGGGGGTGGTTACCG1940.14834299346984967No Hit
CAGGCTGGTCTCGGAACTCCTGACCTCAGGTGATCCACCCGCCTCTGCCTCA1630.12463870069889431No Hit
TTACAGGGGAAGTTTAATTAATTTAGGATTTTGAATGATTATTGACATCCAA1580.12081542767132086No Hit
GCTGCTGGGCTGGGGGTGAAGGCCATGCTGTGGTTGTCGGAGAAGCTGCGCG1540.11775680924926211No Hit
GGGTGCAGATCTCCAAAAGAATGACAGAAAGAAAGAGGGAGTGGTGGAAAGA1500.11469819082720335No Hit
TATCTAGGGCATCAACACATAATCACTAATTTTTCCAAGAACACATGTGCAG1460.1116395724051446No Hit
GCTAACGGGCATTCTGACATGTCACCCATTTTACATTCTTACAGGCATACTT1440.11011026319411522No Hit
GTTTATGGGTGTTACTAACGAGAGGGAAGGAAAGTATTAATAGAATTTTCAG1440.11011026319411522No Hit
CTTATACACATCTCCGAGCCCACGAGACACCCGTAAATCCTGTCTCTTATAC1400.10705164477205648No Hit
CTACACGGGACCGATCTCGGCGGCTTTGACCCAGTTTGGCTCTTCCTTGTGG1390.10628699016654178No Hit
TCACAGGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1390.10628699016654178No Hit
ACGCTAAGGGAAATCAGGCAAAGCTAGACTCAAATTTTGTCTCTGTTTTCTA1370.10475768095551241No Hit
CAGTATGGGAGAGGCTGCAGTCCAGGGTGGACCTGCTGGAGGAGAAGCTGCA1360.10399302634999771No Hit
TATATAGGGATGTTTAGCCTAGTCTACTGCAGACAGAAATTTAAATCCAGTG1360.10399302634999771No Hit
GCTATCGGGGACAATAAGTCTCTTCCATAATTTATAAAGCTCATGCAGATGA1350.10322837174448303No Hit
TACTTTGGGTAAACACAAAAATAAATATCACAGAAGAGTGATACTCTGCTAA1340.10246371713896833No Hit
TATCTCGGGTCCTTGGGAGAAAAAAATGGGAATTGGAGTAAAAAGTGTGTCA1330.10169906253345365No Hit
ACCAATGGGGTCCTTTCCTTCACTGATTTGCTTTAAAAAAAATAAAAGATAA1330.10169906253345365No Hit
TCATAAGGGGAGAGGCGGGGTGCTCCAGAGCTAGAGGCAAAACCCGGAGCTC1320.10093440792793897No Hit
GTCAGTGGGACCAGTGTCTAGAAAGTTAAACAACTGTTTTGTGTCTTAAGTG1320.10093440792793897No Hit
ATGGCGGGGGTGGACCTAGCCAGGAATACTAGGTAGAAAAGGTAACTCTTTA1310.10016975332242427No Hit
CACACTGGGTGCGTTTCATAAAAAAATTTAGTAAAAGATAAACATGAGGACA1310.10016975332242427No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)