FastQCFastQC Report
Sat 31 Dec 2022
SRR5847504.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847504.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences131442
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACCCGTAAATCTCGTATGCCGTCT7680.5842881270826676No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCCGTAAATCTCGTATGC6960.5295111151686676No Hit
CCTAACAGGGGGGTCCCAATGGGAGGTAATTGAATCATGGGGGTGGTTACCG1770.13466015428858358No Hit
GGGTGCAGATCTCCAAAAGAATGACAGAAAGAAAGAGGGAGTGGTGGAAAGA1760.13389936245644468No Hit
TATCTAGGGCATCAACACATAATCACTAATTTTTCCAAGAACACATGTGCAG1690.12857381963147244No Hit
TCACAGGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1600.12172669314222244No Hit
TAAGCGAGGGAGATACCAAAATATTCAAATGGAAATATCAAAAAACTTCTGT1540.11716194214938909No Hit
CAGGCTGGTCTCGGAACTCCTGACCTCAGGTGATCCACCCGCCTCTGCCTCA1520.11564035848511131No Hit
AGCAACGGGTATCATAAAGCAAACACAAGGGAATTTAAAATCATGTCATAAT1520.11564035848511131No Hit
CTTATACACATCTCCGAGCCCACGAGACACCCGTAAATCCTGTCTCTTATAC1500.11411877482083352No Hit
TGCGGGGGTGGTAAAACAAGTCCTGCCAGATTCCTATCTCAGGAGCAACAGA1490.11335798298869462No Hit
GCTGCTGGGCTGGGGGTGAAGGCCATGCTGTGGTTGTCGGAGAAGCTGCGCG1460.11107560749227796No Hit
CCACCAGGGCAGATTTTGATACAGTTTATTGACCATAGATAAACTAATCTTG1460.11107560749227796No Hit
AAAGGCTGGGAACTGAGAGCTAAAGAGACTAGAAAAGAGATAAGCTGCCAAC1440.10955402382800017No Hit
CTGGCCGGGGAAGAAGCGCTACCCCACGACGTTCGTTATGGTGGTCATGTTG1430.1087932319958613No Hit
CTGTTAGGGTGGCCCTACTGCGCAGAAGCATTCAGATGTCACTTGATGATCT1420.1080324401637224No Hit
CTAATTGGGCGCCTACCTGGGCCGGGGGAAGCGGGCCGGCCGGTACGGGGGC1400.10651085649944461No Hit
TGAGTTCGGGGGAATCAATTTAAGAGATTGTGGGGCCTGGGAAGGCAATCCT1370.10422848100302795No Hit
CCACGGGATTCAAGTAAACTTTCCTCAAGCAAAGTTTTAAAAGAGCTTTTCA1370.10422848100302795No Hit
GTACAAGGGGGAGGGCCGGCGCACCATAAAAGAAGCCGCCCTAGCCACGTCC1370.10422848100302795No Hit
CGTTGAGGGAGGTCTTTCAGGAGGTGTTCCAGAAAAAGGCATTGTTATCATA1360.10346768917088905No Hit
GAATAAGGGATGACAATGAAGCAATATAAAGAAATTTAAAAGGTGTAAACCA1360.10346768917088905No Hit
CGGGAAGGGATTGAGAGAAGAGGCCAAAGAAGAAACTTTGGAGAATACTCAT1360.10346768917088905No Hit
CGTAATGGGACCAAACAGCTTTCCACCAACATTCATTTATTCTTTAGGGATG1350.10270689733875019No Hit
AGTGACGGGATGTTAACATCTGTAGCATTGGATCTCATTAGTTTAACAGCTT1350.10270689733875019No Hit
ATGCAAGGGCCATCCTCCAAGGCTAAATACTCGTAATCGACCGATAGTGAAC1340.10194610550661129No Hit
TGCAACGGGTCTCTGATCGGGATGGCACATGCAGCGCAAGTAGGTCTACAAG1330.1011853136744724No Hit
GAATATGGGCAATGAAAAACATCTAGAAAGTTTATACTCATAGAAAATTTAA1330.1011853136744724No Hit
GCTAGTTGGGAATGATCTTAAAATCAGATGAAAAGCTTTTTAAATGTGGATC1320.1004245218423335No Hit
TATCTCGGGTCCTTGGGAGAAAAAAATGGGAATTGGAGTAAAAAGTGTGTCA1320.1004245218423335No Hit
TCAAAAGGGGAAGATTCAAAACTGGAAGCAAAAACTTGCTTGATTTTTTTTT1320.1004245218423335No Hit
CTGCAATGGGAACATAAACAAAGAAATAAAGGAATCAGAAAAAATATTAAAA1320.1004245218423335No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)