FastQCFastQC Report
Sat 31 Dec 2022
SRR5847501.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847501.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences177818
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCCGTAAATCTCGTATGC9680.5443768347411398No Hit
CTTATACACATCTCCGAGCCCACGAGACACCCGTAAATCTCGTATGCCGTCT8510.4785792214511466No Hit
ACTAGAGGGGTATTTAGAAGGAAATTTATAGCACTAAATGCCCACATCAGAA2200.1237220078957136No Hit
ATAATCGGGATAGCAGCTTTATTCATAATTGCCAAAACTTGGAAGCAACCAA1810.10178947013238254No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)